Gene detail information of Glyur000041s00007113 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15520.1 | 4.00E-47 | pleiotropic drug resistance 12 |
| NR | XP_004486707.1 | 2.84E-64 | PREDICTED: pleiotropic drug resistance protein 1-like [Cicer arietinum] |
| Swissprot | tr|Q9M9E1|AB40G_ARATH | 2.00E-53 | ABC transporter G family member 40 |
| trEMBL | tr|G7IMF4|G7IMF4_MEDTR | 2.00E-63 | Drug resistance transporter-like ABC domain protein {ECO:0000313|EMBL:AES68069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 273220 | 273895 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007113.1 | PF01061.19 | ABC2_membrane | 44 | 113 | 2.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.116 |
| SRR1783600 | control | 3.202 |
| SRR1783602 | moderate drought stress | 2.320 |
| SRR1811619 | moderate drought stress | 1.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.338 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.334 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.668 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.797 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.872 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.569 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.930 |
| SRR2868004 | Drought Stress (root) | 7.984 |
| SRR2967015 | Control (root) | 4.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.056 |
| SRR9715740 | Leaf | 31.405 |
| SRR9715741 | Leaf | 63.859 |
| SRR9715739 | Root | 7.279 |
| SRR9715742 | Root | 26.684 |
| SRR9715743 | Root | 27.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.407 |
| SRR8749028 | MeJA induced 9h | 1.824 |
| SRR8749029 | MeJA induced 9h | 5.660 |
| SRR8749030 | Uninduced | 4.175 |
| SRR8749031 | Uninduced | 7.632 |
| SRR8749032 | Uninduced | 25.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.030 |
| SRR8400027 | Control - Root | 7.428 |