Gene detail information of Glyur000041s00007112 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15520.1 | 2.00E-48 | pleiotropic drug resistance 12 |
| NR | XP_004486706.1 | 6.90E-78 | PREDICTED: pleiotropic drug resistance protein 1-like [Cicer arietinum] |
| Swissprot | tr|Q76CU2|PDR1_TOBAC | 1.00E-62 | Pleiotropic drug resistance protein 1 |
| trEMBL | tr|V7C016|V7C016_PHAVU | 4.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:ESW22688.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 264818 | 267858 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007112.1 | PF14510.1 | ABC_trans_N | 43 | 120 | 1.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.121 |
| SRR1783600 | control | 10.820 |
| SRR1783602 | moderate drought stress | 12.534 |
| SRR1811619 | moderate drought stress | 14.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.375 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.653 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.063 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.986 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.460 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.998 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.261 |
| SRR2868004 | Drought Stress (root) | 10.080 |
| SRR2967015 | Control (root) | 5.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.695 |
| SRR9715740 | Leaf | 8.556 |
| SRR9715741 | Leaf | 32.788 |
| SRR9715739 | Root | 6.190 |
| SRR9715742 | Root | 48.761 |
| SRR9715743 | Root | 40.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.530 |
| SRR8749028 | MeJA induced 9h | 4.611 |
| SRR8749029 | MeJA induced 9h | 0.962 |
| SRR8749030 | Uninduced | 1.098 |
| SRR8749031 | Uninduced | 1.390 |
| SRR8749032 | Uninduced | 1.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.252 |
| SRR8400027 | Control - Root | 12.387 |