Gene detail

Gene detail information of Glyur000041s00007110

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15520.1	0	pleiotropic drug resistance 12
NR	XP_003597818.1	0	Pleiotropic drug resistance protein [Medicago truncatula]
COG	NP_682119.1	7.00E-18	ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|Q76CU2\|PDR1_TOBAC	0	Pleiotropic drug resistance protein 1
trEMBL	tr\|G7IMF4\|G7IMF4_MEDTR	0	Drug resistance transporter-like ABC domain protein {ECO:0000313\|EMBL:AES68069.1}

Sequence

Transcript Sequence

>Glyur000041s00007110.1
CACACCCCGAAAAACCAAACTTTCTCTTTCTTTTTTTTTCCCTTTTTATTTTTCATCATTCATTGATTCTTTTCATCACATTAGCTCAAAGAAGAAGAAGAAGAAACAAGAAGTTGAAGTTGTTTTTGTGGTTGTTGTTGTTGTTGGGTAACAACAATAATGGAAGGAACTGATATATACAGAGCGAGTAATAGTTTAAGAGCAAGAAGCTCCACTGTTTGGAGGAACAGTGGAGTTGAGGTTTTCTCAAAGTCTTCACGTGAAGAGGATGATGAAGAAGCTCTCAAGTGGGCTGCACTTGAGAAACTACCAACATACAACCGTTTAAGGAAAGGGTTGTTGACAACATCTCATGGACCCGCAAGTGAGATCGATGTCACAGATCTTGGGTATCAAGAAAGACAGAAACTTTTGGAGAGGTTGGTTAAGGTTGCTGAAGAGGATAATGAAGGGTTCTTGTTGAAACTCAAGGAGCGAATTGATAGAGTTGGGCTTGATATTCCAACAATTGAAGTTCGATATGAGCACCTGAATATTGAGGCTGAGGCTTTTGTGGGAAGCAGGGCTTTGCCCAGTTTCATTAATGCTGCTACTAATGTAGTTGAGGGTTTCCTTAATGTTCTCCATATTATCCCAAGCAAAAAGAGACATGTGAATATTCTTAAAGATGTTAGTGGGATCATTAAACCTCGGAGGATGACACTGCTTTTGGGTCCTCCAAGCTCAGGAAAAACCACTCTCCTTTTGGCCTTATCAGGAAAGCTTGATCCAAGTCTTAAGGTATCTGGAAATGTGACTTATAATGGGCATGGAATGAATGAGTTTATACCTCAAAGAACTGCTGCATATATCAGTCAGCATGATGTTCATATTGGAGAAATGACTGTGAGGGAAACCTTGGCTTTCTCAGCAAGGTGCCAAGGAGTTGGATCTCGCTATGACTTGCTATCTGAGTTATCTAGAAGAGAGAAGGCAGCAAATATCAAGCCTGACCCAGATATTGATGTCTACATGAAGGCAGTTTCAACTGAAGGCCAGGAGTCAAGCGTAGCAACAGATTACGTCCTGAAGATTTTGGGGTTGGACATATGTTCTGATACCATGGTGGGGGATGAAATGTTGAGAGGTATCTCAGGAGGACAAAGGAAACGTGTGACCACAGGAGAGATGTTGGTTGGTCCAGCAAATGCACTCTTCATGGATGAAATATCAACTGGTTTAGACAGTTCCACAACATTCCAAATTGTGAACTGTCTTAGACAATATGTTCACATCCTTAATGGAACAGCAGTTATCTCACTTCTCCAACCAGCACCTGAGACCTATGATCTCTTTGATGACATAATCTTGATCTCTGATGGACAAGTTGTGTACCACGGACCGCGTGAATATGTTCTTGACTTCTTTGAAACCATGGGGTTCAAGTGTCCTGAGAGGAAAGGTGTTGCTGATTTCCTTCAAGAAGTTACTTCAAAGAAGGATCAGGCTCAGTATTGGTTTGCTGAGGCTTTTCAGTCATTCCACATTGGTAGGAAACTTGGGGAGGAACTTGCTGTTCCTTTTGATAAGTCTAAGAGCCACCCTGCTGCTTTGACTACTAAGGAGTATGGTATTAACAAGACAGAGCTCTTGAAGGCTAACTTCGCTAGAGAGTATTTGCTCATGAAAAGGAACTCTTTTGTTTACATCTTCAAGCTATGTCAGCTTTTTGTCATGGCATTGATAGCAATGACACTATTTTTCCGGACTGAGATGCATCATGATGATCAAGATGATGCGGGTGTTTATGCTGGTGCTTTGTTTTTCACATTGGTGACTATTATGTTCAATGGAATGGCTGAGATTTCTATGACCATTGCTAAGCTTCCCGTTTTCTACAAGCAAAGGGACCTTCTGTTTTATCCCTCATGGGCATATGCTATTCCTACATGGATTCTCAAGATTCCAGTCACAATAGTGGAAGTTTCTCTTTGGGTTTTCCTCACCTACTATGTCATTGGATTTGATCCAAATGCTGGAAGAGCCATTGCAGCATTGGGTAGAAACATGATTGATATCAAGGGCTGGTGGATTTGGGGTTACTGGATCTCACCTTTGATGTATGGGCAAAATGCTTTGATGGTCAATGAATTCCTTGGGAACAGTTGGAAGAAAGATAATTTGGGAGCTACATATCTGGATACCCGTGGCTTCTTCACAGACTCATATTGGTATTGGATAGGCTTTGGGGCATTGGTTGGATTTGTGTTCCTATTGAACATGTTGTTTGGTATAGCTCTTGCTATACTTGGCCCATTTGATAAGCCTCAAGCAAATATTTCTGATGATTCAGAAGCCGATGCAGCCGCACAAGAAGTCGAATTGCCACGCATTGAAGGTTCAGAGAGAGATGGTTCTATTGTGGAGTCCAGCCATGGAAAGAAAAAGGGAATGGAAATGAAGGAGCAGGGTGTTAATGAGGACAAATTGGTGCTTTTGAATGGTGTTAGTGGCGCATTCAGGCCCGGTGTTCTCACAGCTTTGATGGGTGTGAGTGGAGCTGGAAAACCGGTGGATACATTGAAGGAAGCATCAAGATTTCTGGGTACCCTAAGAAGCAAGAAACATTTGCTAGAATCTCTGGCTACTGAGTTGATTCCAAGACCCGAGAGGTTAGTTGATATTTCTATGATGTTTATTGAGGAAGTCATGCAACTGGTGGAGTTGGTCCCATTGAGGAACTCGCTGCGCAAGAGGCTGACTATTGCAGTTGAACTAGTGGCTAATCCATCCATCATTTTCATGGATGAGCCTACTTCTGGTTTAGATGCAAGAGCTGCCGCTATTGTTATGAGAACGGTCAGGAACACCGTGGACACAGGAAGAACAGTTGTGTGCACCATCCATCAACCTAGCATTGACATTTTTGAAGCCTTTGATGAGGTAAATGTTGATAATAAACTAATGATAAGACAAGAAATCTATGTTGGGCCACTCGGTCGTCATTCTAGCCATTTGATCAAGTATTTTGAGAGCATTGATGGTGTGAGCAAAATCAAAGACGGATATAACCCGGCAACATGGATGTTGGAAGTTACAACCACAGCACAAGAACTCAGTTTGGGTGTTGATTTTACTGATCTATACAAAAACTCTGATCTATTTAGGAGAAACAAGCAGCTTATACAAGAACTGAGCCAGCCTGCTCCTGCTTGCTTATGGAAACAACGTTGGTCGTATTGGCGTAATCCGCCATACACTGCCGTGAGGTTCTTCTTCACCACTTTCATAGCCTTGATGTTTGGAACAATGTTCTGGGACCTTGGGGGCAAACACACAAGTAGACAAGACCTGTTGAATGCTGTTGGTTCAATGTATACTGCTGTTCTCTTCCTTGGGGTACAAAATTCCTCTTCTGTACAACCTGTGGTTTCAGTTGAAAGAACTGTATTCTATAGAGAAAAAGCGGCTGGAATGTATTCTGCCCTACCCTATGCATTTTCACAGATTTTGGTTGAGCTACCTTACGTTTTCGCGCAAGCCGTGACATATGGTCTGATAGTTTATGCCATGATCGGATTCGACTGGACCGCGGAGAAATTCTTTTGGTACCTGTTCTTCATGTACTTCACATTGCTCTACTTCACCTTCTATGGCATGATGGCTGTGGCAGTGACACCAAATCACCATGTTGCTTCCATTGTGGCTGCTGCTTTCTATGCAATCTGGAACCTCTTCTCAGGATTCGTTGTCCCAAGACCCAGCATTCCAGTGTGGTGGAGATGGTACTATTGGGCATGTCCAGTGGCATGGACTATCTATGGATTGGTTGCATCTCAATTTGGGGACATAACTACAGTAATGACCACTGAAGGTGGAAAAGATGTGAAACAATTCCTAGAAGACTTCTATGGCGTTGAGCATGACTTCATAAAATATTGTGCAATTGTGGTTGCTGGCATTGCTGTTCTCTTTGCTTTCATTTTTGCTGCTGCAATCAAGGCCTTCAACTTCCAAAAGAGATAGATCATTGCACTCTCTTTCCACAGAACATGGAAGATTCTTTATATTATTAAATTTTTTCTCCCCAATTTCTCCTTTTTGCTATACTACTTGTATCTATCCT

Protein Sequence

>Glyur000041s00007110.1
MEGTDIYRASNSLRARSSTVWRNSGVEVFSKSSREEDDEEALKWAALEKLPTYNRLRKGLLTTSHGPASEIDVTDLGYQERQKLLERLVKVAEEDNEGFLLKLKERIDRVGLDIPTIEVRYEHLNIEAEAFVGSRALPSFINAATNVVEGFLNVLHIIPSKKRHVNILKDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDPSLKVSGNVTYNGHGMNEFIPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDLLSELSRREKAANIKPDPDIDVYMKAVSTEGQESSVATDYVLKILGLDICSDTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVNCLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFETMGFKCPERKGVADFLQEVTSKKDQAQYWFAEAFQSFHIGRKLGEELAVPFDKSKSHPAALTTKEYGINKTELLKANFAREYLLMKRNSFVYIFKLCQLFVMALIAMTLFFRTEMHHDDQDDAGVYAGALFFTLVTIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAYAIPTWILKIPVTIVEVSLWVFLTYYVIGFDPNAGRAIAALGRNMIDIKGWWIWGYWISPLMYGQNALMVNEFLGNSWKKDNLGATYLDTRGFFTDSYWYWIGFGALVGFVFLLNMLFGIALAILGPFDKPQANISDDSEADAAAQEVELPRIEGSERDGSIVESSHGKKKGMEMKEQGVNEDKLVLLNGVSGAFRPGVLTALMGVSGAGKPVDTLKEASRFLGTLRSKKHLLESLATELIPRPERLVDISMMFIEEVMQLVELVPLRNSLRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEVNVDNKLMIRQEIYVGPLGRHSSHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELSLGVDFTDLYKNSDLFRRNKQLIQELSQPAPACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTMFWDLGGKHTSRQDLLNAVGSMYTAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSALPYAFSQILVELPYVFAQAVTYGLIVYAMIGFDWTAEKFFWYLFFMYFTLLYFTFYGMMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLVASQFGDITTVMTTEGGKDVKQFLEDFYGVEHDFIKYCAIVVAGIAVLFAFIFAAAIKAFNFQKR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	222835	231940	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007110.1	PF14510.1	ABC_trans_N	69	146	6.30E-12
Glyur000041s00007110.1	PF00005.22	ABC_tran	168	350	7.00E-15
Glyur000041s00007110.1	PF01061.19	ABC2_membrane	490	621	3.70E-23
Glyur000041s00007110.1	PF08370.6	PDR_assoc	665	721	7.00E-20
Glyur000041s00007110.1	PF01061.19	ABC2_membrane	1011	1221	5.90E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.323
SRR1783600	control	51.237
SRR1783602	moderate drought stress	82.293
SRR1811619	moderate drought stress	81.617

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.201
DRR006520	Root Summer glycyrrhizin high producing strain	35.720
DRR006521	Root Winter glycyrrhizin high producing strain	179.417
DRR006522	Root Winter glycyrrhizin high producing strain	175.298
DRR006523	Root Summer glycyrrhizin low producing strain	93.970
DRR006524	Root Summer glycyrrhizin low producing strain	93.932
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.318

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.055
SRR2868004	Drought Stress (root)	85.487
SRR2967015	Control (root)	53.651

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	403.664
SRR9715740	Leaf	217.421
SRR9715741	Leaf	639.552
SRR9715739	Root	93.901
SRR9715742	Root	425.657
SRR9715743	Root	365.616

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.903
SRR8749028	MeJA induced 9h	53.459
SRR8749029	MeJA induced 9h	52.606
SRR8749030	Uninduced	58.216
SRR8749031	Uninduced	105.645
SRR8749032	Uninduced	149.404

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.125
SRR8400027	Control - Root	90.844