Gene detail information of Glyur000041s00007103 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15570.1 | 3.00E-67 | Phototropic-responsive NPH3 family protein |
| NR | XP_003597825.1 | 8.02E-124 | BTB/POZ domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9S9Q9|Y1044_ARATH | 2.00E-30 | BTB/POZ domain-containing protein At1g30440 |
| trEMBL | tr|G7IMG1|G7IMG1_MEDTR | 3.00E-124 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:AES68076.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 183218 | 185778 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007103.1 | PF03000.9 | NPH3 | 2 | 105 | 4.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.242 |
| SRR1783600 | control | 12.215 |
| SRR1783602 | moderate drought stress | 10.157 |
| SRR1811619 | moderate drought stress | 9.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.903 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.695 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.781 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.584 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.687 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.371 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 78.355 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 77.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.652 |
| SRR2868004 | Drought Stress (root) | 1.298 |
| SRR2967015 | Control (root) | 0.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.634 |
| SRR9715740 | Leaf | 8.108 |
| SRR9715741 | Leaf | 4.894 |
| SRR9715739 | Root | 1.854 |
| SRR9715742 | Root | 11.029 |
| SRR9715743 | Root | 9.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.095 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.082 |
| SRR8749030 | Uninduced | 0.089 |
| SRR8749031 | Uninduced | 0.115 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.335 |
| SRR8400027 | Control - Root | 3.199 |