Gene detail

Gene detail information of Glyur000041s00007090.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25760.1	0	Protein kinase family protein
NR	XP_004510300.1	0	PREDICTED: uncharacterized protein LOC101511720 [Cicer arietinum]
COG	YP_006806628.1	7.00E-12	serine/threonine protein kinase [Nocardia brasiliensis ATCC 700358]
Swissprot	tr\|P42158\|KC1D_ARATH	2.00E-44	Casein kinase I isoform delta-like
trEMBL	tr\|F6HYA9\|F6HYA9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59432.1}

Sequence

Transcript Sequence

>Glyur000041s00007090.1
CCCAAACCATAAGCCACCTCTCTCTCCTTTCTCTCTCAAATTCCTNCTTCTATGGTTTCTTCTTCTACTGTGTGATCTCTCACAACCCTAATTCCGCTTGCGATCCCCTGCNTACGCGAATTATACTGTTCTATATTCTGAGATAGAAAGTTTACATTTTGTCACATTTTGCTGCTTCTGCGAAATTGAAAAAAAAAGCCTCTCTAAGAAGCGGCTTTCGGTTCGATTTGGCACGGTTCAGGTTCTGATCGTGAGGAGAAAGAGCTTTTTCGCGTAGTAGTGGAAAACGATTTCTGAATTTTTTATTTTTTTCGGCGTGACGGGGGATGAGATTTGAAGGATGAACGATGCCGGTGCTGCGTAGCGGAGCGCGCCGGGGCCGGGCAGCAGCAGCGAAGCAGCAACGACAGCGACAGAAGCAGCAGNAGGAGGAGGTTCCGGTTGTGGGGGAAGCGATTGCAACGAGAACTAGGAGGCGGCGTGCGGCGGCAGCGGCGGCAAAGAATAACACTAAGGAGGCGGCGGCGGTTGGGGCTGCTGCGGTAAATGAGAACGTAGCTGCTGTTGAGGGTGAGAAGAAGGAAGAAGAGGAGCGTCGGGGGTTGGAGGAAGCTGGTGGAGCAGAGGAGAAGGAAGAGATAGGAGAGAAACAGATGGATGAATTCGACAGTGGTGGTCGCAGCAATGATAAGGCCAATGCCGGTGAAGATGAAGGCGCCGCCCTTGTCATTCCGGAGAAGGTTCAAGTAGGTACTTCTCCTTTGTATAAAATAGAGAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTTGGTCGACGTGTTTCTGGTGGAAATTTGAGTGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCAATAAAATTTGAGCATAGAACTAGTAAAGGATGTAACTATGGACCACCCTATGAATGGCAACACTCTTGGTGGAAGTCATGGCGTGCCACAAGTACATTACAAGGGCAAGCACGATTATGGATATTGCTAGGACCTAGCTTGTGGGATGTTTGGAATAATAATTCTCACACCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCGATATTGGAGAACATGCACTCTCGAGGCTATGTGCATGGGGATGTGAAGCCAGAAAATTTTCTGCTCGGTGCTCCTGGGACTCCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCAACTAAATGGCGGGATAGTACAACAGGTTTGCATGTGGAATATGACCAAAGGCCAGATGTTTTTAGGGGCACAGTGCGCTATGCCAGTGTGCATGCACATTTGGGGAGAACCAGCAGCAGGAGGGATGATTTGGAATCTCTTGCATACACACTGATTTTTCTTCTTCGAGGTCGTCTTCCTTGGCAGGGTTACCAGGGAGAAAACAAAGGATTTATGGTTTGCAGGAAGAAGATGGGAACACCTCCAGATAGCCTATGTTGCTTTTGTCCCACACCTTTTAAACAGTTTGTTGAACATGTAGTAAACCTTAAGTTTGATGAAGAGCCTAACTATGCTAAATACATTTCTCTATTTGATGGGATTGTTGGTCCAAACCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGCCGGTTGGCGATGGGAGAAGACAACGATGAACAACCCGCAAAGAAAGTTCGTATGGGTTTGCCAGCATCCCAGTGGATAAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGATATCACTACAATGTGTCAGACACAAGGCTATCCCAGCACATCGAGAAAGGAAATGAGGANGGTTTATATATTAGCAGTGTTTCTTCATGTCAGGGCCTATGGGCCATAATCATGGATGCAGGGACAGGTTTCTCTGCTCAAGTTCATGAACTCTCCTCCTANTTTTTCCACAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTATTATATCAGCGCAATTGCAGGAGCTCCAAATGGGAGCTCACTAGTATGGATTAACAAAAAGTGGAAGGAGGGCTTTTACGTAACTGCAATGGCCACCTCGGGNCCCAGATGGGGAGTAGTTATGTCTCGCGGTGCGGCGTTTTCAGACCAGGTGGTTGAACTAGATTTTCTGTATCCAAGTGAAGGGATTCACAAGCGGTGGGATTGTGGATACCGCATCACATCGACTGCTGCAACTTTGGAGCAAGCTGCCTTTATCCTCAAAGACAACGATGAACAACCCACTAACAAGGTTCGTATGGGTTTGCCAGCATCCCAGTGGATGAGTGTTTACAGTGCTCGTAGACCAATGAAACAAAGTGTTGCTTCATCTCAGGGCCTATGGGCCATAATCATGGACGCAGGGATAGGTTTCACTGCCCAAGTTCATGAACTCTCCCCCTACCTTTTCCACAAGGAATGGATNATGGAGCGGTGGGAAAAAAATTATTACATCAGCGCAATTGCAGGAGCTCCTAATGGGAGCTCACTAGTAGTAATGTCTAAAGGCACGCGGTATTTGCAGCAGTCATACAAAGTTAGCGATTCATTTCCTTTCAAGTGGATTAGCAACAAGTGGAAGGAGGGCTTTTATGTAACTGCAATGGCCACATCGGGGCCCAGATGGGGAGTAGTTATGTCTCGCAGTGCGGGGTTTTCAGACCAGATAGCTCGTAATACCTTTCGTATTTATGTTCAGTGTTTTCAAATTCATTTCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	78923	100328	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007090.1	PF00069.20	Pkinase	226	400	7.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.113
SRR1783600	control	22.112
SRR1783602	moderate drought stress	22.662
SRR1811619	moderate drought stress	22.424

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.646
DRR006520	Root Summer glycyrrhizin high producing strain	23.145
DRR006521	Root Winter glycyrrhizin high producing strain	29.779
DRR006522	Root Winter glycyrrhizin high producing strain	28.645
DRR006523	Root Summer glycyrrhizin low producing strain	23.153
DRR006524	Root Summer glycyrrhizin low producing strain	24.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.094
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.430
SRR2868004	Drought Stress (root)	34.303
SRR2967015	Control (root)	33.329

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.915
SRR9715740	Leaf	14.987
SRR9715741	Leaf	16.822
SRR9715739	Root	10.028
SRR9715742	Root	29.730
SRR9715743	Root	25.191

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.721
SRR8749028	MeJA induced 9h	27.070
SRR8749029	MeJA induced 9h	19.544
SRR8749030	Uninduced	30.959
SRR8749031	Uninduced	18.132
SRR8749032	Uninduced	22.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.792
SRR8400027	Control - Root	36.315