Gene detail

Gene detail information of Glyur000041s00007088

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15215.2	3.00E-61
NR	XP_004510301.1	1.03E-128	PREDICTED: uncharacterized protein LOC101512036 [Cicer arietinum]
Swissprot	tr\|Q9XI47\|SHH1_ARATH	2.00E-74	Protein SAWADEE HOMEODOMAIN HOMOLOG 1
trEMBL	tr\|A0A072TMY2\|A0A072TMY2_MEDTR	8.00E-125	Sequence-specific DNA-binding transcription factor {ECO:0000313\|EMBL:KEH18213.1}

Sequence

Transcript Sequence

>Glyur000041s00007088.1
AAGAAAATGAAGAAAATCCATCCAAAGACACTAAAAAACTCTTGCCAAAAAAAAAAAAAGACACTGAAAAACTAGGCCATCGAGTAACTTTGGTTCCGACGCCGACGCCNACGCCGACGAGGTTGCGTTTGGAGCAAGCCTGAAGTTAAAGGGATGATTTTTTGACATCTTGGCTATTCAATTCGCACTGCATCCACTTTNTTCTCTTTGAAACGATGGATGAGTTAAGTTTAACAGAATCTCCATTCCCTAAGCTCTCTTTGGAGGAGACGCTGGAATTGGAAAGAATATACAGGGATATGGGGGAAAAATCACTTGATCATAATTTCTGCAAGGAGATTGCTACAACTTTTAGTTCCTCATCAAACGGTAAAACTTCCTTATCGTGGAAACAGGTGCAGCAGTGGTTCCAAAATAAACATAAAGAGTCAATGGACCAAGTTACTTCATCACCCGACGAGCTGAAACTATATGTTGATCTTTCTGATAAATCTACTTTAAGAAATGGACATAAAAGCTCTCCAAGTGCAAAAGGTAATCAAGCTGCAGATCTGACAGAGTTGGCATTTGAAGCAAGATCTTCAAAAGACTTTGCATGGCATGATGTTGCAATGTTTCTTAACTATAGAGTTCTGAGCACAGGCGAACTTGAAGTCCGTGTACGATATGCTGGATTCGGCAAGGAGGAGGATGANTGGGTGAATGTGAAAGAGGGGGTGCGAGAGAGATCCATCCCATTGGAAGCTTCAGAGTGTCACAAGGTGAAGGATGGAGATGTTGTACTGTGTTTCCTGGAAAGAGATGATTATGCCCTCTATTGTGANGCTCGTATTGTGAAAATCCAGAGGAGGGTACATGATACCACAGAGTGTAGGTGCATCTTCANTGTCCGATACTTCCATGACAACACTGAGGTGGAAGTACTTTGTTGGAACAGGTTGTGCTGTAGGCCTACACAAGAACAAGAAGAATCTGCTGTCTCCCCAAAACCTACCCTAAATCCCTTCCTAAATCCCATAGAGAACTTGTGGGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	66515	71835	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.495
SRR1783600	control	13.430
SRR1783602	moderate drought stress	17.152
SRR1811619	moderate drought stress	16.325

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.116
DRR006520	Root Summer glycyrrhizin high producing strain	24.250
DRR006521	Root Winter glycyrrhizin high producing strain	17.456
DRR006522	Root Winter glycyrrhizin high producing strain	18.119
DRR006523	Root Summer glycyrrhizin low producing strain	12.403
DRR006524	Root Summer glycyrrhizin low producing strain	12.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.876

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.349
SRR2868004	Drought Stress (root)	13.467
SRR2967015	Control (root)	13.137

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.813
SRR9715740	Leaf	7.167
SRR9715741	Leaf	9.663
SRR9715739	Root	7.728
SRR9715742	Root	9.880
SRR9715743	Root	10.035

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.227
SRR8749028	MeJA induced 9h	8.987
SRR8749029	MeJA induced 9h	9.178
SRR8749030	Uninduced	3.165
SRR8749031	Uninduced	1.436
SRR8749032	Uninduced	2.063

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.717
SRR8400027	Control - Root	24.556