Gene detail

Gene detail information of Glyur000041s00007082.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32890.1	8.00E-56	GATA transcription factor 9
NR	XP_007135644.1	0	hypothetical protein PHAVU_010G146300g [Phaseolus vulgaris]
Swissprot	tr\|O82632\|GATA9_ARATH	3.00E-81	GATA transcription factor 9
trEMBL	tr\|V7ASR6\|V7ASR6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07638.1}

Sequence

Transcript Sequence

>Glyur000041s00007082.1
ACTCACTCGCTCGCTCGTTCTTTCACGCACCGGTAACTAATAATAACTCTATACGTGAATGGAAGCGCCGGAGTACTTCGTCGGTGGCTATTACGGCGCCGGAGGAGCTGACCAATTCTCGCCGGCGGAGAAGCGCCACGGCGACCAGAAGTCTTGCGAGCCTTTCGCCATCGACGACCTCCTCGACTTCTCCAATGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTCGCCGGAAACTCAACCGACTCTTCCACCGTCACCGCCGTCGACAGCTGCAACTCCTCCACTTCCGGCGGCGACAATAACAACCGCTTCGCCGCCGCCATTGTCCCTCGCGGCTTTGCCTCCGACCTCCAACTCACCGGAGAACTCTGCGTTCCGTACGATGACATGGCGGAGCTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAAGAGGAGCTGAAAACGCTGCAACTTCTCTCCGGCGGCGGCGGTGCAGTCGGCGCGAAGCCGCAGACACCGGAGTCGTCCTCCTCCACCGACACGCTCCCGCCGTTCGCCGCCGCCGAGAGCGCTCGGAACGCGCCGTTCACCCCGCTCCCGGGGAAGGCACGAAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACCCGCCTGCTGCATCTCCCCGACGCGCCTCCGTCTCAGGCGAAGTTGCCGGCGGATTCGGCGGCGAAGAAGCGCGAGGGCTCGAACAACGCGGAGTGCACGGGGAGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGAGGACGGGTCCGATGGGGCCGAAGACGCTNTGCAATGCGTGCGGCGTGAGGTACAAGTCCGGTAGGCTTGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCATGTCGACGAGGCACTCGAATTCGCATAGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGAGATGCAGCGACAGCAGCACCAGCAATTGCTCACCCAGAGTTCCATTTTCGGCGTATCTAACGGTGGAGATGACTTCATGATTCATCATCATCACCACCACCCCCACTGTGGGCCAGAGTTCAGGCATGTTATCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	27418	28641	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0045893 positive regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007082.1	PF00320.22	GATA	235	269	2.40E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.956
SRR1783600	control	0.876
SRR1783602	moderate drought stress	1.826
SRR1811619	moderate drought stress	1.723

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.987
DRR006520	Root Summer glycyrrhizin high producing strain	0.966
DRR006521	Root Winter glycyrrhizin high producing strain	0.508
DRR006522	Root Winter glycyrrhizin high producing strain	0.496
DRR006523	Root Summer glycyrrhizin low producing strain	1.307
DRR006524	Root Summer glycyrrhizin low producing strain	1.311
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.272
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.924
SRR2868004	Drought Stress (root)	21.848
SRR2967015	Control (root)	27.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.453
SRR9715740	Leaf	0.230
SRR9715741	Leaf	0.237
SRR9715739	Root	2.440
SRR9715742	Root	1.925
SRR9715743	Root	2.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.379
SRR8749028	MeJA induced 9h	0.981
SRR8749029	MeJA induced 9h	0.941
SRR8749030	Uninduced	1.054
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.151

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.498
SRR8400027	Control - Root	6.879