Gene detail information of Glyur000041s00007076 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16300.1 | 3.00E-43 | Uncharacterised protein family (UPF0497) |
| NR | XP_003530122.1 | 1.12E-130 | PREDICTED: CASP-like protein POPTRDRAFT_553757-like [Glycine max] |
| Swissprot | tr|B9GXD6|CSPLO_POPTR | 4.00E-100 | CASP-like protein 3A1 |
| trEMBL | tr|I1KGK4|I1KGK4_SOYBN | 4.00E-131 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 7786 | 11659 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007076.1 | PF04535.7 | DUF588 | 41 | 195 | 1.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 173.106 |
| SRR1783600 | control | 175.481 |
| SRR1783602 | moderate drought stress | 177.225 |
| SRR1811619 | moderate drought stress | 179.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 92.951 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 92.068 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.466 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.446 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.651 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.178 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 60.082 |
| SRR2868004 | Drought Stress (root) | 31.633 |
| SRR2967015 | Control (root) | 24.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.130 |
| SRR9715740 | Leaf | 0.723 |
| SRR9715741 | Leaf | 1.121 |
| SRR9715739 | Root | 56.273 |
| SRR9715742 | Root | 56.073 |
| SRR9715743 | Root | 55.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.852 |
| SRR8749028 | MeJA induced 9h | 5.091 |
| SRR8749029 | MeJA induced 9h | 18.254 |
| SRR8749030 | Uninduced | 0.166 |
| SRR8749031 | Uninduced | 0.317 |
| SRR8749032 | Uninduced | 0.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 141.138 |
| SRR8400027 | Control - Root | 140.397 |