Gene detail

Gene detail information of Glyur000040s00007399

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20820.1	4.00E-123	Leucine-rich repeat (LRR) family protein
NR	XP_004510977.1	0	PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum]
COG	YP_001192956.1	1.00E-38	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q00874\|DR100_ARATH	2.00E-158	DNA-damage-repair/toleration protein DRT100 (Precursor)
trEMBL	tr\|G7LEF9\|G7LEF9_MEDTR	0	DNA-damage-repair/toleration DRT100-like protein {ECO:0000313\|EMBL:AET02194.1}

Sequence

Transcript Sequence

>Glyur000040s00007399.1
ATGGCTTCCTCACTCTCGTTGCTAACTCTGCTTCTCTTCGCNGTTATCTCCGCTGTTAACTCCTGCCCACCGTCAGAGCGGGCAGCACTGTTGGCCTTCAAAGCTGCCCTNACCGAGCCCTACCTGGGCATCTTCAACACCTGGTCGGGCTTCGACTGCTGCCGGAACTGGTACGGCGTCAGTTGCAACCCCACCACCTACCGTGTCACCGACATCAACCTCCGCGGCGACTCCGAGGACCCAATCTTCCAGAAGCTTGGCCGCTCTGGCTACATCACCGGAAATATCTCGCCGGAGATTTGCAGCCTTACCAACCTCACCACCCTCGTCGTCGCCGACTGGAAGGCCATCTCCGGCGAAATCCCCTCCTGCATCNCCACCTCCCTCTCCTCCCTCCGAATCCTCGACCTCACCGGTAACCGAATCTCCGGCGAGATCCCCTCCGACATCGGGAATCTCCGGCGACTCGCCGTCCTGAACCTCGTCGACAACGAAATCTCCGGCGAGATTCCGCCGTCGATCGTTGGGCTCTCCGGTCTCATGCACCTCGACCTCAGCAACAACCGAATCGCCGGCGAGTTGCCCTCCGATTTCGGGNAACTCCGAATGCTGAGTCGCGCGTTGCTGAGCCGGAACCAACTCACCGGTTCGATTCCAAATTCTGTGTTGAGAATGAATCGGCTAGCGGACTTGGACCTGTCCTCGAACCGGATAACCGGTTCGATCCCGGACGGGCTTGGAAAAATGCGGGTCCTTTCCACGCTTAAACTGGATGGTAACTNTATGTCGGGTCAAATCCCTTCAGCTTTGCTAAGAAATACGGGTATGGGTATCCTGAACCTGAGTCGAAACGGGTTTGAAGGTACCGTACCCGATGTTTTCGGGGCAAAGTCCTATTTCATGGTTCTTGATTTGTCGTTNAATAATTTGACGGGTCAGATACCCGGTTCGTTGTCATCGGCCAAGTTTATGGGGCATTTGGACATGAGCAACAACCACCTATGTGGAACAATTCCAATTGGGTCTCCCTTTGATCATCTCGATGCGGCGTCGTTTAGTAACAATGACTGTTTGTGTGGAAACCCATTGAAGACTTGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	447032	448132	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007399.1	PF08263.7	LRRNT_2	24	63	1.20E-09
Glyur000040s00007399.1	PF13855.1	LRR_8	130	190	3.90E-08
Glyur000040s00007399.1	PF00560.28	LRR_1	228	248	0.11
Glyur000040s00007399.1	PF00560.28	LRR_1	302	319	0.52
Glyur000040s00007399.1	PF00560.28	LRR_1	326	341	1.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.449
SRR1783600	control	7.412
SRR1783602	moderate drought stress	5.230
SRR1811619	moderate drought stress	5.296

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	125.384
DRR006520	Root Summer glycyrrhizin high producing strain	123.930
DRR006521	Root Winter glycyrrhizin high producing strain	0.504
DRR006522	Root Winter glycyrrhizin high producing strain	0.495
DRR006523	Root Summer glycyrrhizin low producing strain	33.027
DRR006524	Root Summer glycyrrhizin low producing strain	33.805
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.305
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.353

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.334
SRR2868004	Drought Stress (root)	22.300
SRR2967015	Control (root)	37.615

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.949
SRR9715740	Leaf	1.050
SRR9715741	Leaf	1.208
SRR9715739	Root	12.456
SRR9715742	Root	4.615
SRR9715743	Root	5.700

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.065
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.313
SRR8400027	Control - Root	12.668