Gene detail information of Glyur000040s00007386 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52140.2 | 0 | tetratricopeptide repeat (TPR)-containing protein |
| NR | XP_007149054.1 | 0 | hypothetical protein PHAVU_005G037000g [Phaseolus vulgaris] |
| COG | YP_002604693.1 | 5.00E-11 | hypothetical protein HRM2_34540 [Desulfobacterium autotrophicum HRM2] |
| Swissprot | tr|F4J5S1|CLU_ARATH | 0 | Clustered mitochondria protein |
| trEMBL | tr|V7BVK6|V7BVK6_PHAVU | 0 | Clustered mitochondria protein homolog {ECO:0000256|HAMAP-Rule:MF_03013} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 370273 | 392597 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007386.1 | PF15044.1 | CLU_N | 81 | 161 | 3.50E-19 |
| Glyur000040s00007386.1 | PF05303.7 | DUF727 | 251 | 321 | 5.30E-06 |
| Glyur000040s00007386.1 | PF13236.1 | CLU | 372 | 468 | 3.60E-27 |
| Glyur000040s00007386.1 | PF13236.1 | CLU | 508 | 651 | 2.70E-47 |
| Glyur000040s00007386.1 | PF12807.2 | eIF3_p135 | 772 | 959 | 7.30E-52 |
| Glyur000040s00007386.1 | PF13424.1 | TPR_12 | 1037 | 1104 | 5.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.514 |
| SRR1783600 | control | 4.457 |
| SRR1783602 | moderate drought stress | 2.646 |
| SRR1811619 | moderate drought stress | 2.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.220 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.831 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.700 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.660 |
| SRR2868004 | Drought Stress (root) | 4.497 |
| SRR2967015 | Control (root) | 3.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.305 |
| SRR9715740 | Leaf | 4.933 |
| SRR9715741 | Leaf | 5.469 |
| SRR9715739 | Root | 1.040 |
| SRR9715742 | Root | 7.002 |
| SRR9715743 | Root | 5.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.544 |
| SRR8749028 | MeJA induced 9h | 6.573 |
| SRR8749029 | MeJA induced 9h | 3.751 |
| SRR8749030 | Uninduced | 0.066 |
| SRR8749031 | Uninduced | 0.053 |
| SRR8749032 | Uninduced | 0.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.971 |
| SRR8400027 | Control - Root | 8.109 |