Gene detail information of Glyur000040s00007385 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08820.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004487107.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9SR82|PP219_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g08820 |
| trEMBL | tr|I1LVF2|I1LVF2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 362967 | 367185 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007385.1 | PF13041.1 | PPR_2 | 69 | 118 | 6.40E-12 |
| Glyur000040s00007385.1 | PF13041.1 | PPR_2 | 170 | 217 | 2.40E-07 |
| Glyur000040s00007385.1 | PF01535.15 | PPR | 246 | 272 | 0.00028 |
| Glyur000040s00007385.1 | PF01535.15 | PPR | 274 | 303 | 4.00E-09 |
| Glyur000040s00007385.1 | PF13812.1 | PPR_3 | 347 | 370 | 0.0034 |
| Glyur000040s00007385.1 | PF13041.1 | PPR_2 | 372 | 419 | 2.50E-07 |
| Glyur000040s00007385.1 | PF01535.15 | PPR | 447 | 471 | 0.6 |
| Glyur000040s00007385.1 | PF14432.1 | DYW_deaminase | 547 | 652 | 2.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.374 |
| SRR1783600 | control | 1.404 |
| SRR1783602 | moderate drought stress | 2.142 |
| SRR1811619 | moderate drought stress | 2.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.164 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.218 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.862 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.674 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.458 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.639 |
| SRR2868004 | Drought Stress (root) | 2.553 |
| SRR2967015 | Control (root) | 2.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.407 |
| SRR9715740 | Leaf | 0.896 |
| SRR9715741 | Leaf | 1.472 |
| SRR9715739 | Root | 0.306 |
| SRR9715742 | Root | 1.903 |
| SRR9715743 | Root | 1.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.635 |
| SRR8749028 | MeJA induced 9h | 1.995 |
| SRR8749029 | MeJA induced 9h | 0.778 |
| SRR8749030 | Uninduced | 0.339 |
| SRR8749031 | Uninduced | 0.383 |
| SRR8749032 | Uninduced | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.345 |
| SRR8400027 | Control - Root | 3.970 |