Gene detail information of Glyur000040s00007371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45430.1 | 5.00E-45 | AT-hook motif nuclear-localized protein 22 |
| NR | KEH19036.1 | 1.68E-148 | AT hook motif DNA-binding family protein [Medicago truncatula] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 4.00E-50 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|A0A072TPA5|A0A072TPA5_MEDTR | 6.00E-149 | AT hook motif DNA-binding family protein {ECO:0000313|EMBL:KEH19036.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 276246 | 277172 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007371.1 | PF03479.10 | DUF296 | 115 | 230 | 2.30E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.750 |
| SRR1783600 | control | 5.634 |
| SRR1783602 | moderate drought stress | 6.436 |
| SRR1811619 | moderate drought stress | 6.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 79.047 |
| SRR2868004 | Drought Stress (root) | 81.130 |
| SRR2967015 | Control (root) | 94.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.144 |
| SRR9715740 | Leaf | 0.176 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 5.727 |
| SRR9715742 | Root | 6.071 |
| SRR9715743 | Root | 6.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.929 |
| SRR8749028 | MeJA induced 9h | 25.583 |
| SRR8749029 | MeJA induced 9h | 20.850 |
| SRR8749030 | Uninduced | 14.268 |
| SRR8749031 | Uninduced | 4.146 |
| SRR8749032 | Uninduced | 10.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.823 |
| SRR8400027 | Control - Root | 11.474 |