Gene detail information of Glyur000040s00007370.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45440.1 | 2.00E-132 | dihydrodipicolinate synthase |
| NR | XP_004510938.1 | 0 | PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cicer arietinum] |
| COG | YP_270348.1 | 8.00E-97 | dihydrodipicolinate synthase [Colwellia psychrerythraea 34H] |
| Swissprot | tr|Q42948|DAPA_TOBAC | 3.00E-170 | 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (Precursor) |
| trEMBL | tr|A0A072TQB4|A0A072TQB4_MEDTR | 5.00E-179 | 4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000313|EMBL:KEH19033.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 265917 | 266840 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01714 | dapA | EC:4.3.3.7 | Biosynthesis of amino acids | map01230 |
| Lysine biosynthesis | map00300 | |||
| Monobactam biosynthesis | map00261 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007370.1 | PF00701.17 | DHDPS | 7 | 282 | 1.20E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.019 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.077 |
| SRR8749028 | MeJA induced 9h | 0.202 |
| SRR8749029 | MeJA induced 9h | 0.066 |
| SRR8749030 | Uninduced | 0.138 |
| SRR8749031 | Uninduced | 0.083 |
| SRR8749032 | Uninduced | 0.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.066 |
| SRR8400027 | Control - Root | 0.101 |