Gene detail

Gene detail information of Glyur000040s00007369

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45440.1	2.00E-138	dihydrodipicolinate synthase
NR	KEH19033.1	0	4-hydroxy-tetrahydrodipicolinate synthase [Medicago truncatula]
COG	YP_270348.1	3.00E-92	dihydrodipicolinate synthase [Colwellia psychrerythraea 34H]
Swissprot	tr\|Q42800\|DAPA_SOYBN	1.00E-170	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A072TQB4\|A0A072TQB4_MEDTR	0	4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000313\|EMBL:KEH19033.1}

Sequence

Transcript Sequence

>Glyur000040s00007369.1
ATCATCACACCCTCCATACCCAATTCCCTGTCCCTCTGTCTGCTCGCTCTTTATTTCTCGCTCCACCTCTTCTCGACCGATACGCGAAACCGTTTCTTCGGAGCTTCAATCGGGTCGGATATCGGCCACAGTCTCAGGCTTTGGAGCTTGAATCGGTGATTGTTCGGAACCGCGTCGAGTTATGGCCATGCTCAAGAGCCGGATGTTGAGAGGACTCGGTTCCCGGATTTTCCGTTCCGTTACCAGCACCGTCAGCAACAGGAACTCATACTGGAACTCTCCACAAGCAACTGTGATGCCCAGTTTTCACCGTCCGATGAGCACCTCAGAGGTGAATAAAAGGACCTCGATGGAGGACTTGAGGAGTCTGACATTAGTGACTGCCCCTAAAACTCCATACCTACCCAATGGCCAATTTGATCTTGATGCATATGACAACTTGGTGAACATGCACATTGCAAAAGGTGTTGAAGGTATCCTTGTTGCTGGTACAACCGGTGAAGGCTATTTAATGACATGGGATGAACAAATAATGCTCATTGCACACACAGTCAACACTTTTGGTGATAAAGTTAAGATCATTGGCAACGCGGGAAGCAACTGCACATCAGAAGCAATCACTGCCACAGAGCAGGGTTTTGCTGTTGGAATGGATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTCTGCAGGTTTGCTTGCTCACTACAACAGTGTTCTTTCCATAGGCCCTGTCATCCTATACAATGTACCCACAAGGACTTCTCATGACATTCCCCCTAGTGTGGTTGAAGCCTTGGCACAAAATCCAAACTTTGTTGGCATCAAGGAGTGTGTGGGGAATGACAGGATAAAGAAGTATGTGGGTGAAGGACTTGCTGTGTGGACTGGGAATGANGAAGAAAGCCATGATGCTAAGTGGGAGTGTGGGGCTACTGGACTTCACTCTGTTGCAGGCAACATTGTTCCTGGTTTAATGCACCAACTCATGTTTGGGGGAAAGAATCCTGAACTGAACTCAAAGCTCATGCCTTTGTTTGATTGGCTTTTCCATGTGCCAGTCCCAATTGCCTTGAACACAGCACTTGCTCAGCTTGGGGTTATTAGGCCAGTTTTCAGGCTGCCACATGTACCTGTCCCTGTGGAGAAAAGGAGAGAGTTTGTCAATTTGGTGAACCAAATTGGCCGAGAGCATTTTGTTGGGGAAAAAGATGTTCAAGTTCTTGATGACGATGACTTTATCATGGTTTTCCAAAGTTGTAAAACCAGATGCCGCACCATGGCGTCAGTTGGAGGAAATAACAAGATGCGGAACACATACTGGAAGCCTCCACAAGCAGCTGTGAGACTCGATATTCACCTCCCAATGAGCAGCTCAGCGGTAAAAGACAGGGCATCAATTGAGGCTACACGGAGTCTGAGATTCATCACTGCTGTGAAGACTCCATACTTACCTAGTGGCCAATTTGATCTTGAAGCATATGATAACTTGGTGAGTATGCAAATAGCGAATGGCGCTGAAGGTATTCTTGTTGCTGGTTCAACTGGTGAAGGCTCTTTAATGACCTGGGATGAACAAATAATGCTTATTGCACACACAGTCAACTGTTTTGGTGATAAAGTTAAGATTATTGGCAACGCAGGAAGCAACTGCACATCAGAAGCAATTAAAGCCACTGAGCGGGGTTTTGCTGTTGGAATGGATGCTGCACTTCATATCAACCCTTACTATGGCAAAACCTCCTTAGATGGTTTAGTTGCTCACTATAATAGTGTGCTTTCCATAGGCCCCATCATCATATATAACGTACCTGCACGGACTGCTCAAGATATTCCTCCGAATGTTATTGAAATCTTGGCTCAAAATCCTAACTTTATAGGTATCAAGGAATGTGTGGGAAAAGACCGGATCAAGCAGTATACTGATAAAGGAATTGTTGTGTGGACTGGGATTGATAGGATAAGTCATGATGCTAGATGGGATTGTGGGGCTGTTGGAGTTCACTCTGTAGCTGGCAACTTGATTCCTGGTTTAATGAGAGAACTCATGTTTGGGGGAAAGAATCCTACACTGAATTCAAAGCTCACGCCTCTCTTTGACTGGCTTTCCCAGGAGCCAGGTCCGATTGCGTTGAACACGGCTCTTGCTCAACTTGGGGTTATCAAGCCTGTTTTCAGGCTACCACATGTACCTCTACCTATGGAAAAAAGGGTGGAGTTTGTGAATTTGGTGAAGGAAATGGGTCGAGAGCATTTTGTTGNAGAAAAAGATGTTCAAGTTCTTGATGACGATGACTTTATCACAGTTGGTCGATATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	253229	259593	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01714	dapA	EC:4.3.3.7	Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300
			Monobactam biosynthesis	map00261

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007369.1	PF00701.17	DHDPS	64	338	5.60E-89
Glyur000040s00007369.1	PF00701.17	DHDPS	416	690	1.40E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.364
SRR1783600	control	18.353
SRR1783602	moderate drought stress	21.871
SRR1811619	moderate drought stress	21.502

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.561
DRR006520	Root Summer glycyrrhizin high producing strain	12.329
DRR006521	Root Winter glycyrrhizin high producing strain	20.971
DRR006522	Root Winter glycyrrhizin high producing strain	20.894
DRR006523	Root Summer glycyrrhizin low producing strain	16.007
DRR006524	Root Summer glycyrrhizin low producing strain	16.134
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.537
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.861

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.614
SRR2868004	Drought Stress (root)	60.920
SRR2967015	Control (root)	64.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.790
SRR9715740	Leaf	26.178
SRR9715741	Leaf	36.025
SRR9715739	Root	29.099
SRR9715742	Root	26.133
SRR9715743	Root	28.421

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.585
SRR8749028	MeJA induced 9h	97.756
SRR8749029	MeJA induced 9h	69.366
SRR8749030	Uninduced	63.235
SRR8749031	Uninduced	42.740
SRR8749032	Uninduced	65.877

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.854
SRR8400027	Control - Root	25.926