Gene detail

Gene detail information of Glyur000040s00007360

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23740.1	2.00E-66	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	XP_004510932.1	0	PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cicer arietinum]
COG	YP_003881375.1	1.00E-59	zinc-containing alcohol dehydrogenase [Dickeya dadantii 3937]
Swissprot	tr\|Q9ZUC1\|QORL_ARATH	4.00E-89	Quinone oxidoreductase-like protein At1g23740, chloroplastic (Precursor)
trEMBL	tr\|B7FMG3\|B7FMG3_MEDTR	0	Zinc-binding dehydrogenase family oxidoreductase {ECO:0000313\|EMBL:AET02134.1}

Sequence

Transcript Sequence

>Glyur000040s00007360.1
ATGAAAGGCATAACAATGAAGATAANCAGAACCTATGCGACACTGCCTCTGCCGAACACGACGACGAGGACCTCAAAGCGGATTCATCCGGCGCCGATTCCACGAGGATCTCAAAGCCGAAGCACTAGTGCCATCGCATTTTCTTCGGTTGACAGTTCCAATTGTCTAGAAGCATTTGAGAGGAAATCTTCTAAATTTATAATGCAGAAAGCTTGGTTCTATGATNAGTATGGTCCTAAGGAAGTCCTTAAGCTGGGGAATTTACCCATTCCTATTCCTCAGCATAAGCAACTACTTGTCCAAGTTCATGCTGCTGCTTTGAATCCGATTGATTCCAAGAGGTATCAGCGTCCCATTTTTCCATCCAAGTTTCCTGTGGTTCCTGGATGTGACATGGCTGGTGTCGTGGTTGGAAAAGGTGTTGATGTTAAAAAATTTGATATAGGTGATGAGGTCTATGGCAACATCCAAGATTTCAATACAGGGGAAAAACCNAAGCAGCTTGGAACTTTGGCACAGTTCATTGTAGTGGAAGAGAGCTTGGTTGCAAGAAAACCAAAATGCCTTTCATTTGAGGAGGCTGCCAGCTTGCCTTTGGCAGTTCAGACAGCAATAGAAGGCTTCCAAACTGCTGGTTTTAAGAAGGGCCAGAATATCTTTGTGGTTGGTGGAGCAGGCGGGGTTGGAACTCTAGTCATTCAGCTGGCCAAACATTTGTATGGAGCTTCTTATGTANTGGCTACATGTAGCACCCCTAAAGTGGAATTTGTGAAGAAGTTAGGTGCTGATAAAGTGGTGGACTATAGAAAGACTAAATATGAAGACATTGAGGAGAAATTTGATTTTGTTTATGATACAATTGGTGACTGCAAGAAATCTGCTGTTGTGGCAAAGAATGATGCACCAATAGTTGACATAACATGGCCTCCATCACATCCAAGAGCAGTTTATTCAAGTTTGACAGTGTCTGGGGAAAGCTTGGAAAAGCTAAGGCCATATTTGGAAAGAGGAGAGCTCAAACCTGTGATTGATTCCACAGGTCCATATCATTTTGACAATGTGGTTGATGCTTTTGGGTATCTAGAAACTGGAAGAGCTTGGGGAAAAGTTGTTGTCTCAAGCTTCCCTTTAGGGGATCCTCATTCCATCATCTTACCTGGGGTTAATACCAATATAGGAGTGAATGGCTTCTCAAAAGANGTTTTTCTTAAGACCATTAATGCACTGCCATGAATCATCATTATGGAATACAGATTATATGAAGAAAAATGATTGAAACAAGGCTTGGNCTGAATAAACTAAGGAGGATGGCTCTGATGTTGTGTATAGGTNGAAAGTGAAAACAAAGTGACAGATGTGTATTATGGTTCTTTGGCCATCTAATAAATAACATGGAGATGCTTTAAGATAGACATGGAAATCCAAGCAAGACTCTGCTTAAATTGGCTTTATATTTACGCCTAAGTCTACCCTGTTATTTGTTTTAAAAATTTAAAACCCAAACCTAATCTCATCAGCCTTGTATTAAGGCCTAGACTGGTCTTTCTGAAATTAGAGCTTATTTAGAAGTCCTATTTCATATTAAGATATTTACAAGGCCATTCCGCTAAAGACTAATCTAGTGAACGAGGATAAACTAAATGTATAATAAACTACGAATTATGAAAATTAAAATACTATTACTGAGATGGGGCATGAAACATAAGAGTGGAAACTGCAGACTGGGTTAAACTAAGTTTTCTAAAGACACGGGATTACCCTATCATAATGTAATATATGCTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	215772	219434	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007360.1	PF08240.7	ADH_N	96	155	4.10E-08
Glyur000040s00007360.1	PF13602.1	ADH_zinc_N_2	260	372	7.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.068
SRR1783600	control	0.123
SRR1783602	moderate drought stress	0.064
SRR1811619	moderate drought stress	0.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.060
DRR006520	Root Summer glycyrrhizin high producing strain	0.180
DRR006521	Root Winter glycyrrhizin high producing strain	0.048
DRR006522	Root Winter glycyrrhizin high producing strain	0.182
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.887

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.063
SRR2868004	Drought Stress (root)	0.027
SRR2967015	Control (root)	0.111

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.345
SRR9715740	Leaf	18.577
SRR9715741	Leaf	11.102
SRR9715739	Root	0.022
SRR9715742	Root	0.052
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.073
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.010
SRR8749030	Uninduced	0.036
SRR8749031	Uninduced	0.165
SRR8749032	Uninduced	0.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.055
SRR8400027	Control - Root	0.039