Gene detail

Gene detail information of Glyur000040s00007350

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61040.1	2.00E-108	cytochrome P450, family 76, subfamily C, polypeptide 7
NR	XP_003528904.1	0	PREDICTED: geraniol 8-hydroxylase-like [Glycine max]
COG	YP_007126612.1	6.00E-31	Unspecific monooxygenase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	8.00E-160	Geraniol 8-hydroxylase
trEMBL	tr\|I1KIM3\|I1KIM3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G09110.1}

Sequence

Transcript Sequence

>Glyur000040s00007350.1
ATGGAGTACTCTACACTTGTGCTACTTTTCCTTGCATTATGGTTAAGCATTCGGGTTCTCATACCCTGCTTAGGCATTAGAACACCCAAGTCCTCCAAATACCCACCAGGACCTCACCCCTATCCTATCATAGGAAACATCTTGGAACTTGGCAACCAGCCTCACCAAGCACTTACCAACCTTTCTCAAACTCATGGGCCTCTAATGAGTCTGAAGCTTGGTTACACAACCACCATAGTCATTTCATCTCCANAAGTTGCCAAAGAAGTATTGCATAGAAATGACCAAATTCTCTCAAATAGGACAGTCCCAGATACTCTTCGAGCACTTGACCACCACACACTTTCACTGGCGTGGTTGCCTTCTTTGGATTATAAATGGAGGACCCTTAGGAGGGTTTGTGCTACCAAAGTGTTCTCTTCCAAAAACCTTGATTCCACACAAGTTCTTCGTCAAAGGATGGTGCTAGAATTGTTGGATTATGTCAAGGAAAGATGCAAGAAAGGTGAAGCTTTGGATGTTGGTGAGGCTGCTTTTACAACCGTGCTTAATTCTATGTCAAACACTTTCTTCTCAACGAGTTTGGCTCATTACTCCTCTGTTAAGTCTCAAGAGTTCAAGGACATTATTTGGGGCATTATGGAAGAAGCTGGAAGGCCTAATATTGTTGACTTTTTCCCAGTCTTTCGCTTGATTGATCCACAAGGTGTGCGTGGAAGAATGAAGCATTATTTTGGAAAATTGGTTTCATTTGTTGATGGTCTCATAGAAGAGAGGTTACACTTGAAGGCTTTAGAAAATGAATCCAAGGCATCCAATGACGTGTTGGATTCAATAGTGGAACTCATGCTTGAAGACAATTCTCAAGTTAGCCGCCCTCAAATATTACATTTATTCCTGTTGCTACGAAACCCAGCAAAACTAGAGAAAGTTAGAGAAGAGCTTCAACAGGTCCTTGCAATAGGTGAACAACTTGAAGAATCGCACATCTCAAAGCTTCCTTTCCTACGAGCAGTTGTGAAGGAAACTCTTCGCTTGCATCCACCCACCCCGTTGTTATTGCCACGCAAGTCAGAAGTCGATGTTGAACTANGTGGCTTCACGGTGCCTAAAAATGCACAAATTATGGTCAATGTGTGGGCCATGGGGAGAGATTCAAGTATTTGGAAAAACCCAAATGAGTTTGTGCCTGAAAGATTCTTGGACAATGAGATTGATTTTAAAGGCCTTGATTTTGAGTTGATTCCCTTTGGAGCTGGGAGAAGGATTTGCCCTGGATTGCCATTGGCTTACAGGACTATGCACACTGTGTTGGCCTCTCTTTTGCGTGGCTATGATTGGAAGCTTGCGAATGAACAAAAGCCTGAAGACATGGATATGTCTGAGAAATATGGGCTTACTTTGCATAAGGCACAACCTCTCCAACTCATCCCCATCCAAGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	141256	144080	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007350.1	PF00067.17	p450	35	290	1.10E-32
Glyur000040s00007350.1	PF00067.17	p450	297	470	2.30E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.220
SRR1783600	control	0.203
SRR1783602	moderate drought stress	0.172
SRR1811619	moderate drought stress	0.208

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.074
DRR006520	Root Summer glycyrrhizin high producing strain	0.074
DRR006521	Root Winter glycyrrhizin high producing strain	0.276
DRR006522	Root Winter glycyrrhizin high producing strain	0.267
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.779
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.532

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.671
SRR2868004	Drought Stress (root)	1.104
SRR2967015	Control (root)	0.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.234
SRR9715740	Leaf	1.496
SRR9715741	Leaf	1.070
SRR9715739	Root	0.000
SRR9715742	Root	0.117
SRR9715743	Root	0.212

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.737
SRR8749028	MeJA induced 9h	228.337
SRR8749029	MeJA induced 9h	48.244
SRR8749030	Uninduced	127.501
SRR8749031	Uninduced	94.909
SRR8749032	Uninduced	47.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.507
SRR8400027	Control - Root	0.678