Gene detail

Gene detail information of Glyur000040s00007349

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	3.00E-127	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	XP_003521519.1	0	PREDICTED: geraniol 8-hydroxylase-like [Glycine max]
COG	YP_004643624.1	1.00E-41	cytochrome P450 hydroxylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	2.00E-179	Geraniol 8-hydroxylase
trEMBL	tr\|I1JKJ6\|I1JKJ6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G02410.1}

Sequence

Transcript Sequence

>Glyur000040s00007349.1
ATGGAGCACCTTGATGCACTTCTTGTGCTAATTTCTTTAGTAGTTTGGGTAAGCATGNACATCCTCATCTCCAGCATAGGGAAAACACCCAATAAATCCTCCAANTACCCACCAGGACCTCACCCTTTTCCCATCATAGGAAACATCTTGGAACTTGGCAGCCAGCCTCACAAGGCACTTACCAAGCTATCCAAAACTTATGGACCCCTAATGAGTCTTAAACTTGGTCACACTTACTCAACCACCATAGTCATTTCCTCCCCACAAGTTGCCAAAGAAGTACTCCACAAAAATGAACAAATCTTCTCAAACAGGGCCATCCCTGACACCCTTAAGGCACTTGACCATCACATATTTTCAGTGGCATGGTTGCCACCTTCAGATAAATATTGGAGGACCCTTAGGAAAGTTAGTGCTACAAAAGTGTTCTCTTCCCAAAAGCTTGACTCCACACAGTTTCTTCGTCAAAGGAAGGTGCAAGAATTGCTATGTCATGTCAAGGAAATGTGCAAGAAAGGAGAAGCCTTGGATATAGGTGAGGCTACCTTTGTAACCGTGCTTAATTCCTTNTCAAACACTTTCTTCTCTATAGATTTGGCTCATCACAATTCTGGGGGTAAGTCTAAGGAGTTCAAGGAAATTGTTTGGGGCATCGTGGAAGAAGGTGGAAGGCCCAATGTTGTGGACTTCTTCCCGGTCTTTCGAATGCTCGATCCCCAACGCGCGCGCGCGAAAATGAGAAGCTATTTTGAGAAGCTGATTTCGTTGTTTGATGGTCTTATAGAAGAAAGGTTGCACTTGAGAGGTTCGGAAAGTGAGCCCAAGGCATTCCATGACGTGTTAGATTCTGTGCTGGAAGACAATCTGCAACTGAGCCGCCCTCATATTCTGCATTTATTTTTGGATTTATTTGTGGCTGGATTAGACACAACATCGAGTTCAGTAGAATGGGCAATGACAGAGTTGCTACGTAGCCCAACAAAACTAGATAAAGTCAGAGAAGAGCTTCAACAGGTTCTTGGCAAAGGGGAGCAACTTGAAGAATCACACATCTCAAAGCTTCCATTCCTACGAGCNGTGGTAAAAGAAACTCTTCGCTTGCATCCACCCGTCCCATTGTTAGTGCCACGCAAGTCAGAGGCTGATGTTGAGATTTGTGGCTTCACGGTGCCTAAAAATGCACAAATTCTGGTCAATGTGTGGGGTATGGGGAGAGATTCAAGTATTTGGGAAAACCCAAATGAGTTTATGCCTGAAAGATTCTTGGACAGTGAGATTGATTTTAAAGGCCGAGACTTTGAGTTGATTCCATTTGGAGCTGGAAGAAGGATCTGTCCTGGGTTGCCACTGGCTCATAGGACTNTGCACATTGTGTTGGCCTCTCTTCTGCGTGACTACCAATGGAAGCTTGTGAATGGACAAAAGCATGAAGACATTGATATGTCTGAGAAATATGGGTTTACTTTGCATAAGGCACAGCCTCTCAAAGTCGTTCCCATCCAAGCATAATAATATATATATAAGGAGGAAGATATTATAAATACACAGAATAAATTCTTCATAAAACAAGCAAGTTATTGGATATTTCAAAGTTTGCAAACCTAGTGCCTAAGGAAACTGATGTTTCGCTCGCGACTGCATTATATTATTTCTTTTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	136141	137990	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007349.1	PF00067.17	p450	37	491	3.90E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.110
SRR1783600	control	0.176
SRR1783602	moderate drought stress	0.400
SRR1811619	moderate drought stress	0.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	4.534
DRR006522	Root Winter glycyrrhizin high producing strain	4.325
DRR006523	Root Summer glycyrrhizin low producing strain	0.067
DRR006524	Root Summer glycyrrhizin low producing strain	0.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.018
SRR2868004	Drought Stress (root)	19.763
SRR2967015	Control (root)	10.609

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.241
SRR9715740	Leaf	0.038
SRR9715741	Leaf	0.107
SRR9715739	Root	1.681
SRR9715742	Root	1.388
SRR9715743	Root	1.190

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.640
SRR8749028	MeJA induced 9h	171.275
SRR8749029	MeJA induced 9h	28.824
SRR8749030	Uninduced	177.925
SRR8749031	Uninduced	135.507
SRR8749032	Uninduced	74.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.311
SRR8400027	Control - Root	3.443