Gene detail

Gene detail information of Glyur000040s00007346

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35930.1	0	AMP-dependent synthetase and ligase family protein
NR	XP_004510927.1	0	PREDICTED: putative acyl-activating enzyme 19-like [Cicer arietinum]
COG	YP_007159683.1	9.00E-65	amino acid adenylation domain protein [Anabaena cylindrica PCC 7122]
Swissprot	tr\|F4K1G2\|AEE19_ARATH	0	Putative acyl-activating enzyme 19
trEMBL	tr\|G7LCR6\|G7LCR6_MEDTR	0	AMP-dependent synthetase and ligase family protein {ECO:0000313\|EMBL:AET02133.2}

Sequence

Transcript Sequence

>Glyur000040s00007346.1
GTAAACGCTTCTAAACATAAATGACCAATTCAAAAAGAAAATTATGAGATGAAATTGAANCCAACCATTAACTTATGGTCTACGCGACTAATTTTGCCAAAATATATTTAACCGTAATTATTTTTTCTCACTCCATTGATTTCACTACTCGGAAAGAACATTTCAGTGCCGCCGGCTCCTTCTCTTAAAAGTTAAAACAAACAACACAACCACANCTCGGAAAGAAACCGATGAGCGATAACTATGAGCTCAGGAAATGGGAGTGATACACAGACACAGTATTGCTGCATTTCCCACGAGTTCTCGCGAATAGCGTCCGCAAACCCTAACAAAATCGCCGTTGTCCATGCCTCCGGCGTGGCCCACCTCTCCCGCGAAAAACTTGTCTCCCCCAACTTCAATGCAGACATTACCACGCTCTTAGAAGAGCGCGTCGAATCCACGTCTCCGCCACTCTACCACGGGGACCGTTACTTCACTTACTCTCATGTCTTGAACGCGGTTCGTTCCCTCAGCTCTCGACTCCGCTCTATCCTTCTTGGTGCTGATGACCCCCACCTGATCACAGCCAAACCTCAAGGTAATGATGGTGTCCAGGGAACTGTTCAGACATCTGAGTCGTCGGAAACTGTGATGCCTAGTGCAGAGCCAATGGTTAGCTCCAGTGAAGAGTATAGGCCAAAGATAGTGGGGATTTATATGCCTCCTTCTGTTGAATATATTGTTGCTGTTCTTTCTGTATTGAGGTGTGGGGAAGCCTTCTTGCCTCTGGATCCCTTTTGGCCAAACGAAAGGATATTGTCAGTTACTTCTTCTTCTAATGCTGACCTCATTATAGGGTCCCGATCTTCATTTGGTAAAAGTAACTTTGATGAGCTTGATGAATCGCATTGGCTAGTAAAGTCAGTTAATTGCCCTGTTTTGAACTACTCCGTTGAAGAAAATCTTCAAGAATGTAGTTGTTCAACAGATCTGGCATGGCCTTGTGCCAATGAAAAGAAGAGGTATTTTTGTTATCTGATGTACACTTCTGGGTCAACTGGAAAGCCTAAAGGAGTGTGTGGCACTGAACAAGGTCTTTCAAATCGCTTTTTATGGATGCAAGGAGTGTATCCTTTGACTGGGCAGGAACTATTGTTGTTTAAGTCATCAATTAGCTTTGTTGACCACCTGCAAGAGTTTCTCAGTGCTATTTTGACTGCTTGTGTATTAGTTATTCCTCCTTTCAGCAAGCTCAAAGAAAATGTATATCCTTTAATAGATTTTCTGCAGGCTTATTCTGTTAATAGGCTTACGGCTGTTCCATCACTAATGAGGACAATTCTTCCTGGATTGCAAGCTCATGCTGACATGTGGATTGAAAGTTCGCTGAAATTGCTTGTGCTAAGTGGTGAAACTTTTCCTTTGACCTTGTGGGAGGTGCTTTCAACGATATTACCAAAGACGTCAATCTTGAACTTATATGGAAGTACTGAGGTCTCTGGCGACTGTACATATTTTGATTGCAAGAGGATACCATTGATTTTGAAGGAACAAAAGCTAACAAGTGTTCCAATAGGTTTACCCATTAGTAATTGTGATGTGAAGCTTCTTGGTGAAAGTGGTGCATCAAATGAGGGAGAGCTATATGTTGGTGGTTCTTGCATTTCTAGGGGTTACTATAATGAATCTAATATAATGTCTGATGGATTTGTAAAATTGCCTCAAAGTTATCGTTGTGAAGATTCTGTTAATGCTTGCCAAAGCCAATTGTACTTCAGAACTGGTGATTTAGTCAAACAGTTGCCAAGTGGTGATTTTATATTCTTGGGAAGAAAAGACCGCATTGTAAAAGTCCATGGACAGCGTATTGCCCTGGAAGAAATTGAAAATTTGCTAAGGGAACATCCATATATACATGATGCTGCTGTAATTTGTCAGAATCTTCAAGCAGAGCTTGTGCTTATTGAAGCCTTTATAATATTGAAGGACAGGCAAATATTGGGTGAATTATTAATACCTGGAATCAGAAGTTGGATGATTAACAAACTTCCATCAGTTGTGCTTCCTAACCGTTTCATCTTCACTGAATCATTTCCTGTGTCTTCTAGTGGTAAGATTAATTATGAGTTGTTGGTCGGCTCAGCATTATTGACAAAGAATGCCAAGGATAAGGCCTTTCGTGATGCTTTAATGGTTGAAAAGGTATACAATGATGATGATTTCTTTATGATNGGTGGTAACTCTCTTTCTGCTGCCCATGTTGCTCACAATTTGGGGATTGACTTGAGATTTCTTTACTACCATCCAAGTCCTTTAAAGCTTTGTGTGGCTCTTCTCCAGAAGAGAGGATCATGCTCTTTGCATGACAGGCTGGATGATTGTTTGCAAATAGATGCAGACAGAAAAAATAACCATTTTTCTTCAAATCGTACTGAAATTTCAATTCCTCTTGAGTCAAAGATGATTCCCAAAGATGATAATGATGATTTTCCCCCGTCTAAACGCTTAAAGAGGGGTTCTACAGATGTTACATCAGGGGGCAATAAATCATTTCCATGGTATTCCTCTTCAGTATTCTTATCATCCTCATTTAGCCGATGCAACAAGGTGTTGTATGAAGGGCAGCCTGCAGTAATTGATACACACCAAACAACTTGGTCTGCCATTGTTCCAAGAGGAAGCAGCGGTCACATGAAAGGCTTTTGGAAAGTTTACATGGAATCTTGTGTTGATGCTTCTCCAATGCTTGTGCTTAAAGGCTCAGACATTTATTTGTTCATTGGATCTCACTCACATAAATTTCTTTGCATAAATGCTAGAAGTGGTTCTATCCAGTGGGAGGTCAAACTAGAAGGACGTATTGAATGTACAGCAGCAATTGTTTCTGATTTTTCCCAGGTTGTTGTTGGATGTTACATGGGAAAAATATATTTTCTTGATTTTTCAGATGGACACATCTGTTGGATTTTTCAAACATCTGGTGAGGTAAAATCACAGCCAGTTGTAGACACATGCAGACAATTGATCTGGTGTGGCTCACATGATCATAACTTATATGCTCTTGATTACAAAAATCATTGTTGTATCTATAAGCTACCATGTGGCGGCAGTATATATGGGTCACCTGCAATTGATGAGGTTCGTGGCTTGCTTTATGTGGCCTCTACTGGTGGTCGTATAACAGCTGTATCAATATCAGCTTCACCATTTAATATACTGTGGCTACATGAATTAGAAGTCCCTGTGTTTGGTTCTCTGGCTGTCACCCAAAATGGAACTGTAATATGTTGCTTGGTAGATGGCCATGTTCTTGCATTGGATCCCAACGGATCCACAGTTTGGAAGAAAACAACTGATGGTCCAATATTTGCTGGGCCATGCGTACCTTCTGCTCTTCCTCATGAGGTGCTTGTATGCTCCAGAAATGGAAGTGTGTACTCATTCAAACTGGAGGAGGGGGATCTACAATGGGAGTACAATGTGGGAGATCCAATAACAGCATCTGCCTATGTTGACGAGCACTTGCAGCTGGAGTCTGATGCCTCCCACTCTCCAGACAGGTTAATTTGCATTTGTTCCAGTTCTGGAGGCATACACCTTCTTCGAGTGAACAAGAATTCCTCCGAAGATACAAATCAACAAGCAAGTGATGTACAAGAATTTGCAAGGCTAAAATTGCAGGGCGATATATTCTCTTCGCCTTTAATGATTGGTGGACGGATTTTCGTTGGTTGTCGGGATGATTACTTGCATTGTGTTGCCCTCGAAATTCCAAAGCAACATGGAAGTCGAAAGCTTGTGTAG

Protein Sequence

>Glyur000040s00007346.1
MSSGNGSDTQTQYCCISHEFSRIASANPNKIAVVHASGVAHLSREKLVSPNFNADITTLLEERVESTSPPLYHGDRYFTYSHVLNAVRSLSSRLRSILLGADDPHLITAKPQGNDGVQGTVQTSESSETVMPSAEPMVSSSEEYRPKIVGIYMPPSVEYIVAVLSVLRCGEAFLPLDPFWPNERILSVTSSSNADLIIGSRSSFGKSNFDELDESHWLVKSVNCPVLNYSVEENLQECSCSTDLAWPCANEKKRYFCYLMYTSGSTGKPKGVCGTEQGLSNRFLWMQGVYPLTGQELLLFKSSISFVDHLQEFLSAILTACVLVIPPFSKLKENVYPLIDFLQAYSVNRLTAVPSLMRTILPGLQAHADMWIESSLKLLVLSGETFPLTLWEVLSTILPKTSILNLYGSTEVSGDCTYFDCKRIPLILKEQKLTSVPIGLPISNCDVKLLGESGASNEGELYVGGSCISRGYYNESNIMSDGFVKLPQSYRCEDSVNACQSQLYFRTGDLVKQLPSGDFIFLGRKDRIVKVHGQRIALEEIENLLREHPYIHDAAVICQNLQAELVLIEAFIILKDRQILGELLIPGIRSWMINKLPSVVLPNRFIFTESFPVSSSGKINYELLVGSALLTKNAKDKAFRDALMVEKVYNDDDFFMXGGNSLSAAHVAHNLGIDLRFLYYHPSPLKLCVALLQKRGSCSLHDRLDDCLQIDADRKNNHFSSNRTEISIPLESKMIPKDDNDDFPPSKRLKRGSTDVTSGGNKSFPWYSSSVFLSSSFSRCNKVLYEGQPAVIDTHQTTWSAIVPRGSSGHMKGFWKVYMESCVDASPMLVLKGSDIYLFIGSHSHKFLCINARSGSIQWEVKLEGRIECTAAIVSDFSQVVVGCYMGKIYFLDFSDGHICWIFQTSGEVKSQPVVDTCRQLIWCGSHDHNLYALDYKNHCCIYKLPCGGSIYGSPAIDEVRGLLYVASTGGRITAVSISASPFNILWLHELEVPVFGSLAVTQNGTVICCLVDGHVLALDPNGSTVWKKTTDGPIFAGPCVPSALPHEVLVCSRNGSVYSFKLEEGDLQWEYNVGDPITASAYVDEHLQLESDASHSPDRLICICSSSGGIHLLRVNKNSSEDTNQQASDVQEFARLKLQGDIFSSPLMIGGRIFVGCRDDYLHCVALEIPKQHGSRKLV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	120623	131718	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007346.1	PF00501.23	AMP-binding	148	531	3.60E-60
Glyur000040s00007346.1	PF13193.1	AMP-binding_C	540	618	0.00023
Glyur000040s00007346.1	PF13360.1	PQQ_2	834	938	1.40E-06
Glyur000040s00007346.1	PF13360.1	PQQ_2	962	1168	1.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.029
SRR1783600	control	3.018
SRR1783602	moderate drought stress	5.027
SRR1811619	moderate drought stress	5.003

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.969
DRR006520	Root Summer glycyrrhizin high producing strain	2.804
DRR006521	Root Winter glycyrrhizin high producing strain	6.958
DRR006522	Root Winter glycyrrhizin high producing strain	6.596
DRR006523	Root Summer glycyrrhizin low producing strain	4.771
DRR006524	Root Summer glycyrrhizin low producing strain	4.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.376
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.743
SRR2868004	Drought Stress (root)	13.355
SRR2967015	Control (root)	13.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.971
SRR9715740	Leaf	4.580
SRR9715741	Leaf	5.043
SRR9715739	Root	1.207
SRR9715742	Root	5.454
SRR9715743	Root	4.145

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.073
SRR8749028	MeJA induced 9h	9.482
SRR8749029	MeJA induced 9h	3.441
SRR8749030	Uninduced	4.255
SRR8749031	Uninduced	2.247
SRR8749032	Uninduced	2.754

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.553
SRR8400027	Control - Root	13.724