Gene detail

Gene detail information of Glyur000040s00007345.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18030.1	8.00E-96	HAL3-like protein A
NR	AET02132.2	2.41E-144	phosphopantothenoylcysteine decarboxylase [Medicago truncatula]
COG	YP_007204720.1	2.00E-42	phosphopantothenoylcysteine synthetase/decarboxylase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9SWE5\|HAL3A_ARATH	5.00E-121	Phosphopantothenoylcysteine decarboxylase
trEMBL	tr\|G7LCR5\|G7LCR5_MEDTR	9.00E-145	Phosphopantothenoylcysteine decarboxylase {ECO:0000313\|EMBL:AET02132.2}

Sequence

Transcript Sequence

>Glyur000040s00007345.1
TATGTATTTACTATTTGCCCTAAGGCTAACATAACCCTTTTTTGTAAACAACACAATCCTTTGACAAAAAAAAAGAGAGAGGCACAAACAGGAACACATTGAAACAAAAAACACAAACACAGAGTCAGACACTGCAGACACAACGCACGCACGAAAGGGCTTGTGGTGTCGGTTTCAGGTTGCTGCCGAGGTTGTTGTGTTGTGAGGGAAGCTCACCAGGTTTTTTATGAGTAAGCTGAAACTCCTGTTTGAATCACGGATATTTATGATCTTTGTTGAAACCTCTGGGTGATGATGGCCTGCCCAGAATCTGTAAGTTCAGTGGGAGAGAATATGTCAGTGGATGCTGCCCCCAGGAAGCCTCGGATTCTACTTGCCGCTAGTGGAAGTGTTGCTGCTGTTAAATTTGCGAATCTTTGTCATTGTTTCTCTGAATGGGCAGAAGTAAGAGCAGTTGCCACAAATGCATCTTTGCATTTTATTGACAGAACAGCAATTCCCAAGGATGTAATTTTGTATACGGATGAGTGGTCTAGTTGGAAGAAACTGGGCGATAGCGTGCTTCACATTGAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCGAACACTCTTGGCAAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGCGAGCCTGGGACTACAGCAAGCCGTTCTTCGTTGCACCAGCCATGAACACTTTCATGTGGAACAATCCTTTCACAGAGCGGCATCTTATCTCAATTGATGAGCTCGGTATTTCTCTCATTCCACCTGTTACAAAGAGGTTAGCTTGTGGCGATTATGGCAATGGTGCAATGGCTGAACCTTCTACCATATACTCCACTGTAAGGCTCTTTTATGAGTCAAAGGCTCACCAAGGTAATGGTGATGTTTGACAAGTTATGTTGACAATTGTACAAGGATGAATGGTGTACTTGGTTGGACTTGTCTTGACTTGACTTCCTCACCCAGTTTTATTGCATCATTGTTTTTAGCATTTGTGTTTCTCTTACATCCACTCTGATCATAGGTGTGGTGTGTTATTTTTTTTTGGATAAATTTGTGGTGTGTTATTGTTAAAGGGAATGTGCCACATTCTCCTTTCATGCATCAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	115999	118081	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01598	PPCDC, coaC	EC:4.1.1.36	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007345.1	PF02441.14	Flavoprotein	25	153	1.80E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.700
SRR1783600	control	7.628
SRR1783602	moderate drought stress	11.471
SRR1811619	moderate drought stress	11.425

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.858
DRR006520	Root Summer glycyrrhizin high producing strain	12.613
DRR006521	Root Winter glycyrrhizin high producing strain	28.686
DRR006522	Root Winter glycyrrhizin high producing strain	28.061
DRR006523	Root Summer glycyrrhizin low producing strain	17.943
DRR006524	Root Summer glycyrrhizin low producing strain	17.516
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.324

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.569
SRR2868004	Drought Stress (root)	20.834
SRR2967015	Control (root)	31.052

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.423
SRR9715740	Leaf	16.763
SRR9715741	Leaf	15.683
SRR9715739	Root	19.177
SRR9715742	Root	17.465
SRR9715743	Root	14.925

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.251
SRR8749028	MeJA induced 9h	10.254
SRR8749029	MeJA induced 9h	8.818
SRR8749030	Uninduced	4.876
SRR8749031	Uninduced	2.627
SRR8749032	Uninduced	4.415

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.991
SRR8400027	Control - Root	22.615