Gene detail information of Glyur000040s00007344 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61050.2 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_003521498.1 | 0 | PREDICTED: synaptotagmin-5-like isoform X1 [Glycine max] |
| Swissprot | tr|A0JJX5|SYT4_ARATH | 1.00E-92 | Synaptotagmin-4 |
| trEMBL | tr|K7KCB9|K7KCB9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G02370.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 100747 | 112445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007344.1 | PF00168.25 | C2 | 257 | 336 | 1.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.874 |
| SRR1783600 | control | 7.872 |
| SRR1783602 | moderate drought stress | 9.040 |
| SRR1811619 | moderate drought stress | 9.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.319 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.070 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.955 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.035 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.466 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.106 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.030 |
| SRR2868004 | Drought Stress (root) | 26.200 |
| SRR2967015 | Control (root) | 41.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.002 |
| SRR9715740 | Leaf | 26.541 |
| SRR9715741 | Leaf | 19.080 |
| SRR9715739 | Root | 2.817 |
| SRR9715742 | Root | 15.874 |
| SRR9715743 | Root | 13.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.774 |
| SRR8749028 | MeJA induced 9h | 24.045 |
| SRR8749029 | MeJA induced 9h | 16.722 |
| SRR8749030 | Uninduced | 14.024 |
| SRR8749031 | Uninduced | 9.070 |
| SRR8749032 | Uninduced | 6.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.003 |
| SRR8400027 | Control - Root | 35.301 |