Gene detail

Gene detail information of Glyur000040s00007332

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61130.1	0	galacturonosyltransferase 1
NR	XP_004510897.1	0	PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1 [Cicer arietinum]
COG	YP_007713204.1	4.00E-07	hypothetical protein MMALV_05390 [Candidatus Methanomethylophilus alvus Mx1201]
Swissprot	tr\|Q9LE59\|GAUT1_ARATH	0	Polygalacturonate 4-alpha-galacturonosyltransferase
trEMBL	tr\|V7AQP2\|V7AQP2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06923.1}

Sequence

Transcript Sequence

>Glyur000040s00007332.1
CAACAGTGAGGATTAGATTATCATAATAAATAAGTTGTCCCGCATGATTGATTGCTGAAAAAATAAGAAAGAAAGCNATAGAAAGAGCGAGAAAACAGTGAAAGAAAGGAAAAGAAAAATCCCAGACTGAAGAGAGAGAAAGCTACCACCACCACCATCGTTGCTCACTTTTTCTCCTCTCGCTCTCACCTCGCTAACGCACACGGAATCAACGCATTGATTTGCTCTCTCTCTATCCCTTACACTGGCTGTGTCGGTTTGGGACTTCGAATCAAGCACAGTGTACTTGCTCCACTGAGTTGATGATGGATTTCGACTAGCATTTTCGCGCCATAAACCCTAAGAAGCTCAACTTCGAATCAGTTGCAAGAGTTCCTTTTCGTCTTCTGATCCGCAATGGCGCCAAAGCGAGGGCTTCCTTTAACCAAGAACAGAAGCAAGGGATCCCGTTTCCCCGTTTTGTGTTTCGTTCTCCTCTGTGTTCTTGCGCCCGTGATTTTCTTCCTCGGTCGGGGGTTCCACGTTGCGGTTAACTGCTACAGGTTGCCAAATGGAGAGAATGGCAGGCATTGCAAGACCTTAAATCACTTTTTTCGAAAGAGGCAAGCACAGGCTTGTAAAGTTTTTGATGTTATTGTATCCAGCACAAATGATATGGGGCCTTTGAGTCTTGACAATTTCAGAAAAAACAATTTGTCTGCTTCATGGAGAGTTGTTGGATTAGAGACTTCAAGTGCTGCTTATGAGCAACCAACAACACATGTTAGACAAGAAAAACCAAAGGTGAAGGAAGGCAGATCTTCAGGTGACGGTCTTGCTCGGTGGACTGGTAATCTTGCACATCGAGCTCGAAGGCAATTAATAGAAAAAAAGCGGGAAAAGCGTGCTGCTGAGTTGGTAAAAGTGGATAATGAAGTAATTGTAAAACTTGAAAATGCAGCTATTGAACGCTCAAGATCTGTTGAGTCAGCCGTTCTGGGAAAATACAACATTTGGAGGAAAGAAATTGAGAATGAAAATGCTGACTCCACTGTTCGGTTGATGCGGGACCAGATCATTATGGCTAGGGTATATGTGAGTATTGCAAAGATGAAGAACAAGCTTGAACTGTGCCAAGAACTGCAATCTCNGCTCAAAGAGAGTCAACGTGCTTTAGGTGATGCAATTTCTGATGCGGATCTGTATCACAGTGCACATGAAAAACTAAAGGCTATGGGCCAAGTTCTGTCAAAAGCAAGGGAGCAATTGTATGACTGCAAGTTGGTCACTGGAAAACTGAGAGCTATGCTACAAACAGCTGATGAGCAAGTTAGGAGCTTGAAGAAACAAAGCACATTCCTCGGTCAGTTGGCTGCCAAGACCATACCAAATGGAATTCATTGCTTATCTATGCGCCTTACGATAGATTACTACCTTCTTCCTCCTGAAAAGAGAAAATTCCCTAGGAGTGAGAACTTGGAGAATCCCAATCTCTATCATTATGCGCTATTTTCAGACAATGTCTTGGCTGCATCTGTTGTTGTAAACTCAACTGTTATGAATGCGAAGGATCCTTCGAAGCATGTTTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTCTTTTGAACCCTCCTGGAAAAGCTACAATCCATGTTGAAAATGTTGATGAATTCAAGTGGCTGAACTCATCCTACTGCCCTGTCTTGCGGCAGCTGGAATCTGCAACAATGAAAGAGTATTATTTCAAGGCAGGCCATCCAAGCACACTTTCTTCCAGTGCTTCCAATCTGAAGTATAGAAACCCGAAATATCTCTCAATGCTCAACCATCTGAGATTCTATCTTCCACAAGTTTATCCAAAATTGGATAAAGTGCTTTTTCTTGATGACGACATTGTTGTTCAGAAGGATTTGACCGGATTATGGGCAGTGAATCTTCGGGGGAAAGTAAANGGTGCAGTTGAAACATGTGGTGAGAGCTTTCACCGATTTGACAAGTATCTTAACTTTTCAAACCCACACATTGCAAGAAATTTTGATCCAAATGCTTGTGGTTGGGCATACGGGATGAACATATTTGATCTGAAGGAGTGGAAAAAGAAGGATATCACTGGCATATATCACAAGTGGCAGAATATGAATGAAGACAGGGTACTCTGGAAGCTGGGGACATTACCTCCAGGGCTAATGACATTCTATGGGCTGACACATCCGCTAAATAAATCATGGCATGTCCTTGGTTTGGGTTATAATCCAAGTGTAGATCGAACAGAGATTGAAAAAGCAGCAGTTGTACACTACAATGGTAACATGAAGCCGTGGCTAGAGATTGCCATGACAAAGTACCGACCTTACTGGACTAAATATGTCAAATACAATCATCCCTATCTTCGGAACTGTAAATTCATATCTCTCTCAAATGACGGACTTTTCAAGAATGATGTTTGTCTGGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	27619	33524	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007332.1	PF01501.15	Glyco_transf_8	329	644	1.30E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.981
SRR1783600	control	21.865
SRR1783602	moderate drought stress	17.698
SRR1811619	moderate drought stress	17.453

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.965
DRR006520	Root Summer glycyrrhizin high producing strain	26.378
DRR006521	Root Winter glycyrrhizin high producing strain	14.049
DRR006522	Root Winter glycyrrhizin high producing strain	13.937
DRR006523	Root Summer glycyrrhizin low producing strain	18.408
DRR006524	Root Summer glycyrrhizin low producing strain	18.986
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.286

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.354
SRR2868004	Drought Stress (root)	28.429
SRR2967015	Control (root)	32.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.838
SRR9715740	Leaf	7.991
SRR9715741	Leaf	11.884
SRR9715739	Root	2.262
SRR9715742	Root	10.386
SRR9715743	Root	8.461

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.185
SRR8749028	MeJA induced 9h	19.949
SRR8749029	MeJA induced 9h	11.646
SRR8749030	Uninduced	3.219
SRR8749031	Uninduced	2.344
SRR8749032	Uninduced	2.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.266
SRR8400027	Control - Root	55.834