Gene detail information of Glyur000040s00007331 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45640.1 | 2.00E-51 | SIN3 associated polypeptide P18 |
| NR | XP_007134930.1 | 2.45E-96 | hypothetical protein PHAVU_010G087700g [Phaseolus vulgaris] |
| Swissprot | tr|O64644|SAP18_ARATH | 6.00E-66 | Histone deacetylase complex subunit SAP18 |
| trEMBL | tr|V7ANN3|V7ANN3_PHAVU | 9.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:ESW06925.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 24379 | 26824 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007331.1 | PF06487.7 | SAP18 | 33 | 152 | 2.80E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 111.632 |
| SRR1783600 | control | 112.019 |
| SRR1783602 | moderate drought stress | 98.970 |
| SRR1811619 | moderate drought stress | 98.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 189.646 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 187.471 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 226.586 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 221.088 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 123.922 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 124.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 60.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 143.363 |
| SRR2868004 | Drought Stress (root) | 126.612 |
| SRR2967015 | Control (root) | 123.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.464 |
| SRR9715740 | Leaf | 79.831 |
| SRR9715741 | Leaf | 85.791 |
| SRR9715739 | Root | 46.439 |
| SRR9715742 | Root | 62.802 |
| SRR9715743 | Root | 62.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 157.967 |
| SRR8749028 | MeJA induced 9h | 75.378 |
| SRR8749029 | MeJA induced 9h | 114.167 |
| SRR8749030 | Uninduced | 61.845 |
| SRR8749031 | Uninduced | 25.935 |
| SRR8749032 | Uninduced | 53.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 148.123 |
| SRR8400027 | Control - Root | 141.927 |