Gene detail

Gene detail information of Glyur000040s00007330

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11920.1	1.00E-178	glutaredoxin-related
NR	XP_007134932.1	0	hypothetical protein PHAVU_010G087800g [Phaseolus vulgaris]
COG	YP_001998414.1	3.00E-33	glycoside hydrolase 15-like protein [Chlorobaculum parvum NCIB 8327]
trEMBL	tr\|V7ART9\|V7ART9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06926.1}

Sequence

Transcript Sequence

>Glyur000040s00007330.1
AAAAAAGCAAAAAAAACAATTTTATCGAAAAAAAAAAGCAGAAAACAAAAAGACCACCTTTGTCTGTTCCCCCTTCCCCTTTGGACCGTTTCCTCGTATATTATCCCAATTAATCAAAATGAAAAACCTTGCTTACAAGACAAAGAACAACACTTCTATCTCCTATATCACATTCCTAAATTCTCTGCTCCTTAATCTNATGATTCTATCTCCACAATAGCTTTCAATTCCGGCGCCGCAATGGGTTCCGAAGCGGAGAAGCCAACGGAAACTGTTCAATCCAATAATCNACAATTTCATCGTGATAAAGTTTCACCCGAGAATCGCGCTAACGGCTATGAAGACGTTACTAACAGCCGAATTAGTTACGATGATGGCGGCGGNGGTGATAGTGAAGAAGGCGATGGCAAAGTAGGGTTTATTCATCCTCACTCACTTCTCCCGAAGCCGGTTCCGCCTGAGATTTTGAAAGCCAACAAAAACGGCGACGCTTCCGTTGCTGGCGGCATGCCGTCCATCGGGAGCTTCATCCGCCAGCAGAGCAACGACCTGTCGGCGGCGATCGCGAAGCGAGTCTCGTCGTTCCGGCAAACTACGGAGGAGAACGAGGAGAAGAAGGATGAGGAAGTGACGGAGTTCAACCTCTCCGGAGTCAAGGTCGTCGTGGAGCTGAAACCAGAGGAGGAACCGGCGATGAAAGGGAGGATCAGCTTCTTCTCGAGGTCCGGTTGCAGGGACTGCACGGCGGTGCGGAGGTTCTTCAGAGAGAAAGGGCTCAAGTTCGTGGAGATCAACGTCGACGTGTTCCGCGAGAGGGAGAGAGAGCTGAGAGAGAGGACGGGGAGCACCTCGGTGCCGCAGATTTTCTTCAACGAGAGGCTCGTCGGGGGGTTGGTGGCGCTGAACTCGCTGCGGAACAGCGGCGAGTTTGAGCGGAGGGTGGCGGAGCTGTTGGGGGAGAAACTCCCCGGCGGCGACGCGCCTCCGCCGCCTGTGTACGGGATTGATTATCTCGAGGAGGATCGAACGGACGAGATGGTTGGGGTCATTAGTGTTTTGCGGCAGAGGTTGCCGATTCAGGACCGGTTCAGGAAGATGAAGATTGTGAAGAACTGTTTCGACGGGAACGAGTTGGTGGAGGTTCTGGTTCACTACCTCAGCTGCGCGCGTAACGAGGCTGTCGAGATCGGAAAACAGTTATTCAGGAAGCACTTCATCCATCATGTTTTCGGGGAAAATNATTTTGAAGAAGGAAATCACTTGTATCGTTTCCTTGAGCATGAACCCTTTATCCCCAGATGCTTTAATTTCCGTGGTGCCACGAATGACAATGAACCAAAGACAGCAGCTGCAATTTGCGAAAGGCTTACCAAGATAATGTCTGCCATTCTTGAGTCGTATGCTTCTGATGATAGACAACATGTTGATTACGAGGCCATTAGCCAAAGCGAAGAATTTCGTAGGTATGTAAATATGGCACAGGATCTGCAGCGAGTGAGTCTCTTGGAACTATCAGAAAATGAGACGCTCGCCTTCTTCTTAAATTTATATAATGCCATGGTCATCCATGCTGTCATTAGTGTAGGGTGTCCGGAAGGTGTAATTGATAGGAGATCCTTCTTCAATGATTTCCAGTACTTGATTGGAGGGTATCCTTATTCTCTTGCGATTATTGAAAATGGTATCCTCAGATGCAATAGGAGGTCACCATATTCCTTAGGGAAGCCCTTTAGCACAGGAGACCGGAGGTTAGAGGTTTCTCTTGTCAAGTTGAACCCATTATTTCACTTTGGACTTTGTAATGGTACAAAATCCAGCCCAAAGGTGAGATTCTTCTCACCCCATAGAGTTGTAGATGAATTAAGAGGTGCTGCAAGAGAGTTTTTTGAGAATGGTGGAATTGAAGTGGACCTAGAGAAGAGAGCCGTTCATCTCTCTCGGATTTTCAAGTGGTTCAGTGGGGATTTTGGACAAGAGAAAGACATACTAAAGTGGATACTTAATTACTTGGATCCAAATAAAGCAGGTCTTTTGACACATCTCTTAGGTGACGGTGGACCTGTTAATATCTCTTACCAGAATTTTGATTGGTCATTAAATTCTTGAGTAGTGGTAAACCGATTTGATTCAGCCACGGAATATACGGTATGCTTATTGGACGTGTCCCAGATTCTGGCATCTTATTCCATCCAAAGGATGATATGATATCAGAACAGATGATTCATAGATCTGTTTTTTGCAAACCACGTGCAGATAGTGTTATGCAGAAATTCTAGATAGTACAGTTTAAAATAAGATCTTTTTTCAGAACAAGAAGTTGTGGGTATTGATAAATATAAATCCTTAGGTAGGAACAGATTCTGCAGAGGATTGGTTGATTACGATGAGGCTATAGACAGCATCGGAGTTGTGAAATCGTGTACCTCACTACTTTTTTCTTTTGCCGCTGATGCATTTGGAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00040	12385	19001	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0035556 intracellular signal transduction

GO:0045454 cell redox homeostasis

molecular_function

GO:0009055 electron carrier activity

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000040s00007330.1	PF00462.19	Glutaredoxin	158	215	2.10E-14
Glyur000040s00007330.1	PF00610.16	DEP	277	344	1.10E-14
Glyur000040s00007330.1	PF04784.9	DUF547	419	548	3.50E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.658
SRR1783600	control	0.617
SRR1783602	moderate drought stress	0.539
SRR1811619	moderate drought stress	0.581

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.903
DRR006520	Root Summer glycyrrhizin high producing strain	3.731
DRR006521	Root Winter glycyrrhizin high producing strain	11.932
DRR006522	Root Winter glycyrrhizin high producing strain	11.792
DRR006523	Root Summer glycyrrhizin low producing strain	14.619
DRR006524	Root Summer glycyrrhizin low producing strain	14.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.772
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.730

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.859
SRR2868004	Drought Stress (root)	17.021
SRR2967015	Control (root)	14.830

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.118
SRR9715740	Leaf	2.633
SRR9715741	Leaf	17.120
SRR9715739	Root	2.838
SRR9715742	Root	7.245
SRR9715743	Root	6.535

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.057
SRR8749028	MeJA induced 9h	18.506
SRR8749029	MeJA induced 9h	10.375
SRR8749030	Uninduced	20.906
SRR8749031	Uninduced	23.763
SRR8749032	Uninduced	14.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.901
SRR8400027	Control - Root	5.265