Gene detail

Gene detail information of Glyur000039s00004228

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28040.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003518672.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max]
COG	YP_004775215.1	8.00E-45	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|I1JDU5\|I1JDU5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G10770.1}

Sequence

Transcript Sequence

>Glyur000039s00004228.1
AAGGCACAAGGAGAGCAAAGAGGTAGAGGTTATAGGACACGACAAAGCCTTTTGGTTTGGAGACAAAGGCCTTGTAAGGTGTAATGGGGTGGCAATTTTGTCAGTAGCTAAGCCACTTAGCCAGCCATGTTTGTTGGACCAAAGTTGTGTGTATTGATATATCACGGGACTACACTAACATTACCACATTCACCCCATAATTGCCTTTCTCAATCACCTCTCTCTCACGCCCCATTTCTTGCAAACTTATTCTTCTCTCTTTCTCGTGAGCACACAACACACATGTAACATCGTTTTCTCTGAGCTAGTAGTGTAATAACATAACATCTACCAGTCCTTCATTACACTTTTTCACATGTTATACTATCCTTAACCATAGTCATAGCTAACTATACCAAAGATAGTAATAAGAGAATCAGTCCTCAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAATGATGACAAGTTTTCAGTTTCACTGGAAAGTTTTGCTGATTTCAATTTCCTATTTGATGCTGACATGTTTGGGGAACAATGACATGGTTGCTGCACAGTTGAATGATGATGTTCTTGGCCTGATTGTGTTCAAATCAGACCTTGATGACCCTTCTTCACACCTTGCTTCATGGAATGAGGATGATGTCAACCCATGTTCATGGCAGTTTGTGCAGTGCAACCCTGTGAGTGGAAGAGTCTCTGAGGTCTCATTGGATGGTTTAGGACTATCTGGGAAGATAGGAAGAGGTCTTGAGAAGTTGCAGCATCTCAAGGTATTGTCCCTTTCACACAACAATTTGAGTGGGAGTATTAGTCCTTCACTCACTCTTTCCAATAGTCTTGAAAGGCTAAACCTTAGTCACAATGGTCTTTCTGGCCCCATACCTACTTCCTTTGTGAACATGGGTTCAGTGAGATTTCTTGATCTTTCTGAGAATTCATTCTCAGGAACAATCCCTGATAGTTTCTTTGAGAGCTGTTCTTCCCTTCATCGCCTTTCTTTGGCTAGGAACATGTTTGAAGGACCAATTCCCAGCACACTTTCTAGATGTTCCTCATTGAATAGCCTTAATCTTTCCAANAACCGTTTCAGTGGTAATGTAGACTTTACTGGGATTTGGTCATTGAATAGGCTTAGGAACTTGGATCTGTCCAACAATGCCTTCTCTGGGTACTTACCTAATGGGATTTCAGCCATACATAACTTGAAAGAGNTCTTGTTGCAAAACAACCAGTTTTCAGGTCCATTACCAATTGATATTGGACTCTGCCTGCATTTGAATAGGTTGGATTTTAGTAATAATCAGTTCAGTGGAGAACCACCAGAGTCACTTGGGAGGCTTAATTCTCTGAGCTATTTGAAGGCATCAAATAATCTCTTCTCAGGTGAATTGCCACAGTGGATTGGTAACATGACTAGTTTGGAACACCTTGAGCTCTCAAACAATCAGTTCTATGGATTCATTCCACAGTCAATAGGGGANCTGAGATCATTGACTCACCTGAGCCTTTCAAATAACAAGCTTGTTGGAGATATTCCTTTGTCACTGGTTTCCTGCACAAAGTTATCTGTGCTCAGGCTCAAAGGCAATGGCTTCAATGGTACCATACCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGACTTTTCCCATAATGATCTGGTAGGTTCAATTCCAGCAGGCTCAAGTAGGATCTTAGAAACTCTCACACATTTGGATCTTTCAGATAACTATCTCCAAGGGAACATCCCTGCAGAAATGGGGCTTCTTTCAAAACTGAGATATTTGAATTTGTCTTGGAATGATCTCCATTCACAGATGCCTCCAGAGTTTGGCCTCCTTCAGAATCTAACAGTTTTGGATCTTCGTAATAGTGTCTTGTATGGTTCTGTTCCGGCGGATATATGTGATTCAGGCAATTTGGCAGTCCTTCAACTGGATGGAAACTCATTCAAGGGGTCTATTCCAGAAGAGATTGGGAATTGCACATCTCTTTACTTGCTTGGAGAGATACCAATGGAGCTTGGAATGCTTCAGAATCTTCTTGCTGTGAATATATCGTATAACAGGCTCACAGGCAGGCTTCCAACTAGCAGTATATTCCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTTGGTATTTGCTCGCCCTTGCTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCTCTAGTGCTTGACCCAAATGCCTATAACAACCAAATAGGTCCTCAAAGGCAAAGAAACAATGAATCNGCAGCTGTGTCTAGCCAAAGTCATCGCCACAGGTTCCTTAGTGTTTCTGCTCTTGTAGCAATTTCTGCATCCTTTGTCATTGTGTTAGGAGTGATTGCTATTAGCCTGCTCAATGTTTCTGTGAGGAGAAGGCTAACATTTGTGGACAATGCCTTGGAAAGCATGTGCTCAAGCTCATCTAGATCAGGAACTCCAGCCACAGGAAAACTCATTCTGTTCGATTCCCAGTCCTCGCCCGATTGGATCAGTAATCCGGAATCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACAGTTTACAAGGTTCCACTTGGATCACAAGGTAGAATGGTGGTAGCAATCAAGAAGCTCATCACCTCAAACATACTCCAATACCCAGAAGACTTTGACCGCGAGGTTCGGATCCTAGGCAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTACTGGACACCTCAACTACAGCTTCTAGTATCTGAATATGCACCAAATGGTAACCTCCAAACCAAGCTACATGAGAGGCTTCCTTCAAGTCCTCCACTTTCTTGGGCCACAAGATTCAAGATCTTGCTTGGAACAGCAAAGGGTCTTGCCCATTTGCACCATTCGTTCCGGCCACCGATCATTCACTACAACATAAAGCCAAGCAACATCTTGCTTGATGAGAACCACAACCCCAAGATCTCAGATTTTGGGTTAGCTAGGCTCCTGACAAAACTGGACAGGCATGTGATGAGCAATAGGTTCCAGAGTGCATTGGGGTATGTGGCACCAGAATTAGCATGCCAGAGCTTAAGGGTCAATGAGAAGTGTGATGTGTATGGTTTTGGGGTGATGATCCTTGAGCTAGTGACTGGTAGGAGGCCAGTGGAGTATGGGGAAGACAATGTGCTGATACTGAATGACCATGTGAGGGTGTTGCTTGAGCATGGGAATGTGTTGGACTGTGTGGATCCAAGCATGAGTGGTGAGTACCCTGAGGATGAGGTGTTGCCAGTTCTGAAGTTGGCTATGGTGTGCACCTCTCAAATACCTTCTAGCAGGCCTACCATGGCTGAAGTGGTGCAAATACTGCAGGTCATCAAAACCCCAGTTCCTCAAAGGATGGAAGTGTTTTGA

Protein Sequence

>Glyur000039s00004228.1
MMTSFQFHWKVLLISISYLMLTCLGNNDMVAAQLNDDVLGLIVFKSDLDDPSSHLASWNEDDVNPCSWQFVQCNPVSGRVSEVSLDGLGLSGKIGRGLEKLQHLKVLSLSHNNLSGSISPSLTLSNSLERLNLSHNGLSGPIPTSFVNMGSVRFLDLSENSFSGTIPDSFFESCSSLHRLSLARNMFEGPIPSTLSRCSSLNSLNLSXNRFSGNVDFTGIWSLNRLRNLDLSNNAFSGYLPNGISAIHNLKEXLLQNNQFSGPLPIDIGLCLHLNRLDFSNNQFSGEPPESLGRLNSLSYLKASNNLFSGELPQWIGNMTSLEHLELSNNQFYGFIPQSIGXLRSLTHLSLSNNKLVGDIPLSLVSCTKLSVLRLKGNGFNGTIPEGLFGLGLEEIDFSHNDLVGSIPAGSSRILETLTHLDLSDNYLQGNIPAEMGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLTVLDLRNSVLYGSVPADICDSGNLAVLQLDGNSFKGSIPEEIGNCTSLYLLGEIPMELGMLQNLLAVNISYNRLTGRLPTSSIFQNLDKSSLEGNLGICSPLLKGPCKMNVPKPLVLDPNAYNNQIGPQRQRNNESAAVSSQSHRHRFLSVSALVAISASFVIVLGVIAISLLNVSVRRRLTFVDNALESMCSSSSRSGTPATGKLILFDSQSSPDWISNPESLLNKASEIGEGVFGTVYKVPLGSQGRMVVAIKKLITSNILQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEYAPNGNLQTKLHERLPSSPPLSWATRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENHNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLDCVDPSMSGEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	362238	365928	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004228.1	PF08263.7	LRRNT_2	34	74	4.90E-10
Glyur000039s00004228.1	PF00560.28	LRR_1	103	122	0.18
Glyur000039s00004228.1	PF00560.28	LRR_1	127	148	0.048
Glyur000039s00004228.1	PF13855.1	LRR_8	152	211	9.60E-08
Glyur000039s00004228.1	PF00560.28	LRR_1	225	244	0.64
Glyur000039s00004228.1	PF13855.1	LRR_8	273	331	1.80E-06
Glyur000039s00004228.1	PF00560.28	LRR_1	345	365	0.13
Glyur000039s00004228.1	PF13855.1	LRR_8	393	452	2.30E-06
Glyur000039s00004228.1	PF00069.20	Pkinase	693	964	7.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	83.873
SRR1783600	control	83.746
SRR1783602	moderate drought stress	67.533
SRR1811619	moderate drought stress	67.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.460
DRR006520	Root Summer glycyrrhizin high producing strain	48.602
DRR006521	Root Winter glycyrrhizin high producing strain	8.036
DRR006522	Root Winter glycyrrhizin high producing strain	7.682
DRR006523	Root Summer glycyrrhizin low producing strain	38.056
DRR006524	Root Summer glycyrrhizin low producing strain	37.528
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.740
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.679
SRR2868004	Drought Stress (root)	11.883
SRR2967015	Control (root)	10.758

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.857
SRR9715740	Leaf	1.449
SRR9715741	Leaf	2.462
SRR9715739	Root	14.404
SRR9715742	Root	33.202
SRR9715743	Root	28.879

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.095
SRR8749028	MeJA induced 9h	0.030
SRR8749029	MeJA induced 9h	0.087
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.016
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.600
SRR8400027	Control - Root	63.180