Gene detail

Gene detail information of Glyur000039s00004225

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60710.1	9.00E-143	NAD(P)-linked oxidoreductase superfamily protein
NR	XP_003621701.1	0	Aldo/keto reductase [Medicago truncatula]
COG	YP_004641887.1	2.00E-109	auxin-induced protein PCNT115 [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q7XT99\|AKR2_ORYSJ	0	Probable aldo-keto reductase 2
trEMBL	tr\|A2Q5B6\|A2Q5B6_MEDTR	0	Aldo/keto reductase family oxidoreductase {ECO:0000313\|EMBL:AES77919.1}

Sequence

Transcript Sequence

>Glyur000039s00004225.1
AAACACTATGTTAGTAAAAAAAAACAAAAATTCTACTATTTGGCCGTAGTTTTCCCCTTATTTTCCGTATCATGTGTCAGTTTAAATATACACAACATTACATTTGCTAATTTTGAAGTTTTTACAACATATATATGGAATATTCGCCTAACAATTGATGTGTTCAGAGATAAACAANAGTAATCCGACAAGAAGATATTCTTATATTACAATCCTTGATTAATTCGCCCGTGGCAGTCACGTAAAACAACANCACTATTGGCAGAAAAGCATAGGAACTGTTGACTCTTCACTTTCTAATTCTGACCTTACATATGCATAAGATAGAATTCGGGGATTCGTTCAGGTAAATTACCCAATACAGAGCATATATAGTTACAGAGCAATGGCGAAAGTGGGTAGAATGAAGCTGGGATCACAAGGCTTGGAGGTTTCCTTGCAGGGACTTGGGTGCATGAGCATGTCTGCTTTCTATGGTCCTCCTAAGCCTGAACCTGACATGATTTCCCTCATCCACCACGCCATACAAAGCGGTGTCACATTCCTTGACACCTCTGACATCTATGGCCCCTACACCAACGAGCTCCTTCTTGGAAAGGGTTTGAAGGGATGGGTGAGAGAGAAGGTTGAATTGGCTACAAAGTTTGGTGTCAAAGCTGATGAAGGGAAATACGAAATTCGTGGTGATCCAGCACACGTGAGAGATGCTTGTGAGGGAAGCTTGAAGAGACTTGATATCGATTGCATTGATCTCTATTACCAGCATCGTATTGATACTCGTGCGCCAATTGAAGTCACGGTTCAATGGAGCAAGAGCCTAACCACCGCAACAAGCTCAATGGAGCAAGAACTTGAAAACCCTAATATAGAGGAGANTCTGTCATTAACAGGGATTGGGGAGCTTAAAAAACTTGTTGAAGAGGGAAAAGTAAAATACATTGGTTTGTCTGAGGCNTCAGCTTCAACAATCAGAAGAGCACACGCAGTTCATCCAATAACAGCTGTGCAGTTGGAGTGGTCACTGTGGTCAAGAGATGTGGAGGAAGAAATAGTTCCTACTTGCAGAGAACTTGGTATTGGAATTGTTGCATATAGTCCTCTTGGGAGAGGGTTCTTCTCATCAGGAACAAAGATGGTTGAGAATTTCTCAAAAGATGACTACCGGCAGTATATGCCTAGATACCAACCCGAGAATCTGCAGCAGAATCAGGCTATATTTGAGAGGGTTAGTGAACTGGCTACAAAGAAAGGATGTACTCCATCTCAGCTTGCATTGGCCTGGGTTCATCACCAAGGAAAAGACGTGTGCCCTATACCCGGAACCACCAAAATTGAGAACTTTAATGAAAACATTGGGGCTTTGTCTGTCAAACTAACACCAGAAGATATGGCAGAAGTTGAGTCCTTGGCAGATGCTGTTAAGGGTGATAGATGTGGGAAGGGTGAACCTACATGGAAGNTATCTGATACCCCACCACTTTCTTCATGGAAAGCTTCATAATGAAGTGCTTTGCTTTGTTTGCTTAATGCTTATACTAGTGTGCCTTAAGAAATAAATCAGCATGAGGGGCATCAGGCATGCCTTCTTGAAAGGAATTTGNATGTATTGTAAACCTTTACAGTTTCTAGCATTTTATATAGACGCCAATTGTCATGCTTTTGTATACCATTTCTGCAAAAACAAAAATGTTTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	345814	352966	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004225.1	PF00248.16	Aldo_ket_red	20	342	4.20E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.022
SRR1783600	control	0.011
SRR1783602	moderate drought stress	0.022
SRR1811619	moderate drought stress	0.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.063
DRR006520	Root Summer glycyrrhizin high producing strain	0.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.230
DRR006522	Root Winter glycyrrhizin high producing strain	0.127
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.499
SRR2868004	Drought Stress (root)	0.390
SRR2967015	Control (root)	0.282

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.732
SRR9715740	Leaf	3.399
SRR9715741	Leaf	9.129
SRR9715739	Root	0.000
SRR9715742	Root	0.110
SRR9715743	Root	0.123

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.418
SRR8749028	MeJA induced 9h	0.129
SRR8749029	MeJA induced 9h	0.260
SRR8749030	Uninduced	0.158
SRR8749031	Uninduced	0.113
SRR8749032	Uninduced	0.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.772
SRR8400027	Control - Root	0.474