Gene detail information of Glyur000039s00004222 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16490.1 | 9.00E-22 | ROP-interactive CRIB motif-containing protein 4 |
| NR | NP_001236808.1 | 4.63E-93 | uncharacterized protein LOC100527236 [Glycine max] |
| Swissprot | tr|Q9FFD5|RIC4_ARATH | 4.00E-26 | CRIB domain-containing protein RIC4 |
| trEMBL | tr|C6T3Q3|C6T3Q3_SOYBN | 2.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G29100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00039 | 340128 | 341821 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000039s00004222.1 | PF00786.23 | PBD | 107 | 137 | 2.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.530 |
| SRR1783600 | control | 6.303 |
| SRR1783602 | moderate drought stress | 4.740 |
| SRR1811619 | moderate drought stress | 4.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.517 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.579 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.266 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.888 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.850 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.044 |
| SRR2868004 | Drought Stress (root) | 14.325 |
| SRR2967015 | Control (root) | 11.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.924 |
| SRR9715740 | Leaf | 0.073 |
| SRR9715741 | Leaf | 0.356 |
| SRR9715739 | Root | 1.174 |
| SRR9715742 | Root | 3.491 |
| SRR9715743 | Root | 3.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.300 |
| SRR8749028 | MeJA induced 9h | 0.659 |
| SRR8749029 | MeJA induced 9h | 1.261 |
| SRR8749030 | Uninduced | 0.203 |
| SRR8749031 | Uninduced | 0.284 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.903 |
| SRR8400027 | Control - Root | 11.202 |