Gene detail

Gene detail information of Glyur000039s00004219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05850.1	6.00E-120	Chitinase family protein
NR	XP_004492044.1	0	PREDICTED: chitinase-like protein 2-like [Cicer arietinum]
COG	YP_003125181.1	1.00E-14	chitinase [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q9MA41\|CTL1_ARATH	2.00E-152	Chitinase-like protein 1 (Precursor)
trEMBL	tr\|A2Q575\|A2Q575_MEDTR	0	Nodule Cysteine-Rich (NCR) secreted peptide {ECO:0000313\|EMBL:AES77898.1}

Sequence

Transcript Sequence

>Glyur000039s00004219.1
ATGACAAACGCAAGTTCGAATTGGACAGAGAGAGGAGGGGTGGTGGTGGTGGCGTGGGAGAAGGAGGTGGTGGAGGAGGAAGAAAGGAGAGGTGACGCACAACCGAACCGAGAGGAAAACAACAACGAAGGACAACAAGGGCATTTCACAGAAGCGAGGTTCTTTGCCTCAAAGCCAGTCTGTTCTCCACTAAACATCGAACACTTCATTGCCCAACAAACACCCATCCAACCGTCGATCATCTCCAAAACCGTTCGAGACATAATCACATATAAAACCGCACCCACTACACTGTCGATGGAGATGGCGAAAAGAAACGCCGTCGTTTTGTTTCTGATCCTTGCATTGGCAGCAGCGAGTGTGAGGGGTGACGAGTCAAACACGAAGACGCTGGTGAAGTACAAGCACGGGAAGAAGTACTGTGACAAAGGGTGGGAATGTAAAGGGTGGTCCATTTACTGCTGTAACCTAACCATAAGCGATTATTTTCAGACCTACCAGTTCGAGAACCTCTTCTCGAAGCGGAACTCGCCGGTGGCTCACGCCGTTGGATTCTGGGACTACCACTCCTTCATCACCGCCGCTTCGATTTACGAGCCCCTGGGATTCGGCACCACCGGCAACAAAACCTCGCAGATGAAGGAGATTGCCGCATTCCTCGGACACGTCGGCAGCAAAACCACCTTGGCAACCGGAGGACCTTTGGCCTATGGTCTCTGTTACAATCATGAAATGAGTCCTAGTCAGTCATACTGTGATGACTATTACAAATTCACATACCCCTGTACTCCTGGTGCTGAATACTATGGACAAGCTTTGAAGGTGAATCTACTCGACCATCCAGAATACATAGAGCAGAATGCAACCCTTGCTTTCCAGGCTGCAATTTGGAGATGGATGACTCCAGTCAAAAAGTCACAACCCTCTGCCCATGATGTCTTCGTTGGCAACTGGAAGCCAACCAAGAATGACACACTGGAGAAACGGGTTCCTGGTTTTGGCACTACAATGAACATTCTATATGGTGATGGTGTTTGTGGACAGGGTGATGTTGACTCAATGAACAACATCGTTTCCCACTACCTATATTATCTTGACCTTCTTGGTGTTGGTCGAGAAGATGCTGGGCCCCATGAATTCCTTACATGTGCTGAGCAGGTTCCTTTCAACCCATCTTCTAAAGCAGCAACGTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	328675	333191	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH19

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006032 chitin catabolic process

GO:0016998 cell wall macromolecule catabolic process

molecular_function
GO:0004568 chitinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004219.1	PF00182.14	Glyco_hydro_19	167	373	2.00E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	467.830
SRR1783600	control	470.640
SRR1783602	moderate drought stress	316.626
SRR1811619	moderate drought stress	315.281

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	253.756
DRR006520	Root Summer glycyrrhizin high producing strain	254.181
DRR006521	Root Winter glycyrrhizin high producing strain	249.208
DRR006522	Root Winter glycyrrhizin high producing strain	243.330
DRR006523	Root Summer glycyrrhizin low producing strain	129.928
DRR006524	Root Summer glycyrrhizin low producing strain	133.056
DRR006525	Leaf Summer glycyrrhizin high producing strain	234.146
DRR006526	Leaf Summer glycyrrhizin high producing strain	232.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	389.593
SRR2868004	Drought Stress (root)	275.406
SRR2967015	Control (root)	297.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	164.547
SRR9715740	Leaf	88.336
SRR9715741	Leaf	82.215
SRR9715739	Root	297.816
SRR9715742	Root	284.867
SRR9715743	Root	282.275

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	183.201
SRR8749028	MeJA induced 9h	104.854
SRR8749029	MeJA induced 9h	152.552
SRR8749030	Uninduced	50.814
SRR8749031	Uninduced	39.962
SRR8749032	Uninduced	45.521

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	353.375
SRR8400027	Control - Root	443.238