Gene detail

Gene detail information of Glyur000039s00004218

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02750.2	2.00E-123	Protein phosphatase 2C family protein
NR	XP_003552650.1	0	PREDICTED: probable protein phosphatase 2C 33-like [Glycine max]
Swissprot	tr\|Q9M8R7\|P2C33_ARATH	2.00E-149	Probable protein phosphatase 2C 33
trEMBL	tr\|I1N4Z5\|I1N4Z5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G51970.1}

Sequence

Transcript Sequence

>Glyur000039s00004218.1
GTTTGGGTGGCGGAAAGACAAAGTCTATAATCACAGCCATTCATCGAAAGGCAGCACCTGCCGGTGACGCACCCGTTCGTGACGGTAGCGCTGCCCCTTCAGCTTTTCCTGAACAAGACGAACAAGAAGAAGAAACTCACTCGTGACGTTGTTCAATTCATTTTCAATCGATTCAGTTTTCGCAAAGCGATTCTCGAGGAATCAAAAAGGACGGAGCAAAACGCTGGATCGATAATCGCGATTTTGCTTTTTTGCAGTTTCAGGATTTTGATTTTATGATATTCGATTCACGCGCTTTTCGACAAGGTTACTGTTATATAGGCTGATTTTTGGATTGGATTTAAGTTAGTTCGTTCGTTNATTCAATCGAATCGGATTTCATCGCAATCATGACTCAGGCGGTGGAAGTGTTGAATCGGTATGGAACGGATCTGGTTGGGGAAGCGAGGGGTTCAGATTCGGAGTGTTTGGCGGGTTTTGAGTGTTTCCTGAACATTGTGAGGGCTTTGGGAATGGGATCGTGCATCTCTGAGGTTGGTGCTGGTGGTGGTAGTTCACCTCCTCTGCTCACTTATTCGCCTGAATCCAATGCCGATGGTGGGAAGAGGAGGAGGTTAAGGGGTTCCACTTCCTTTGACTATAAAGTGCCTGGGAGGATGTTCCTAAACGGCTCAAGTGAGGTTGCATCCATGTATTGCAAGCAAGGTAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGTTCAAAAGAGGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCGAAGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTGGTGCACAATGGGATTTGCATCACAAGAATATAGATGGACACAGTGATAACAGCAGTGCCGCTGGAAGTTATAATTCTGAAGGGCAATTTAGACTGGTTGGTGAGAAACCTAGTCATGCTGATCATGAGCTTGATGGAACAAATACAATTTTAGCACTAAAAGAATCCTTCTTGAAGGCTTGTAAGATTATGGACAAAGAACTGAGACTACATCCTGATATTGATTGCTTTTGCAGTGGGACTACAGCAGTTACCTTGGTCAAGCAGGGGCTGAATCTTGTTATTGGAAATGTTGGGGATTCAAGAGCTGTATTGGGAACTCGAGATCATGATGATTCTCTTATTGCTGTTCAGTTGACCATTGACCTGAAGCCAAATCTTCCAAGGGAAGAAGAGAGGATCAAGCATCGTAAAGGAAGGGTTTTTTCTCTTCAGAATGAACCTGAAGTTTCTCGAGTTTGGCTGCCTAACTCTGATTTCCCAGGTCTAGCTATGGCACGGGCTTTTGGAGATTTTTGCCTGAAGGACTTTGGATTGATTGCTGTTCCTGATGTCTCATATCACCGCCTTACTGAGAAGGATGATTTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTCTTGTCAAACGAAGAAGTTGTGGACATTGTGGCATCTGCTCCACAGTCTACTGCTGCTCGAGTACTGGTTGAGTCCGCTGTTAAAGCATGGAGGACAAAATTCCCCTTTTGCAAGGTTGATGATTGCGCCGTAGTTTCCCTCTTCTTTGATTCAAATTCAGACTCAAAGGCAGCATACACCACAACAGACAAGTTGACGCCAGAGGCATCACCTAACCAATTTGAACNGTCACCTCTACTTGGTGAGAAGGGAAATGGAGTGGAAGCTGAAAAAGAGCTGCAATAGCACTACTTTTGTACCATGTCTCTTCCCAAGCCTTTGCTGGTTTTATNGAGAAGGTTGGGAAAATTGTGCTCCAACAGTAAAAGAAAGAGTCATTGTTTTGATTATTTTTTTGGTAGTTTTTCTGCCAATATTCTTTTCATTATTTATCTTTCATTTCCTTGGACAGCATTTGAGGGGTGGGGGGAGGTTGTGGGGGAGAATATCCGGAGGAAAAGGGGTACCGGGCTTATTTTTTGTGCTGGAGGTCATTTTCCTTCTCTGTATATTTGGTAGATTTGGAGTTTTTGTAAATCCAAGTCTCTAGATACATGTTATAGAGTTTGTCCCGTCATTGTCTGAAATCTGGCGTCGTTTTTATTTGCATCCTTCTTAAATTGTAGTTATGTTTTCCAATTTAGTCGGCAAGAGCGAGGAACTGGAAAAAATTTCTCTGTTATGGGCTTTTCAATCAGGTTTTTCTTGACTATATCTCCATGTTATCCTGCTCTCAAATTTTCAATTGATGTTGTTAATTGATGATATTGTGCGTATTGAACCCGATTGAGCAAGTGTCTGTTGTGTCCGAGGGAGTTGATGCTGCCTGCCTGTTGGGTCACTGCTAGCNGTCTCACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	316584	321156	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004218.1	PF00481.16	PP2C	103	389	1.70E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.462
SRR1783600	control	6.417
SRR1783602	moderate drought stress	5.859
SRR1811619	moderate drought stress	5.865

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.676
DRR006520	Root Summer glycyrrhizin high producing strain	18.588
DRR006521	Root Winter glycyrrhizin high producing strain	18.195
DRR006522	Root Winter glycyrrhizin high producing strain	17.901
DRR006523	Root Summer glycyrrhizin low producing strain	40.681
DRR006524	Root Summer glycyrrhizin low producing strain	40.747
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.756
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.945
SRR2868004	Drought Stress (root)	70.284
SRR2967015	Control (root)	78.966

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.360
SRR9715740	Leaf	30.252
SRR9715741	Leaf	41.643
SRR9715739	Root	7.338
SRR9715742	Root	12.766
SRR9715743	Root	12.506

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.903
SRR8749028	MeJA induced 9h	25.293
SRR8749029	MeJA induced 9h	18.448
SRR8749030	Uninduced	36.960
SRR8749031	Uninduced	127.946
SRR8749032	Uninduced	42.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.162
SRR8400027	Control - Root	14.445