Gene detail

Gene detail information of Glyur000039s00004213

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13250.1	9.00E-36	RING finger protein
NR	XP_004513750.1	2.97E-107	PREDICTED: uncharacterized serine-rich protein C215.13-like [Cicer arietinum]
Swissprot	tr\|Q9M9Y4\|DRIP1_ARATH	2.00E-19	E3 ubiquitin protein ligase DRIP1
trEMBL	tr\|K7L8W7\|K7L8W7_SOYBN	7.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G28962.1}

Sequence

Transcript Sequence

>Glyur000039s00004213.1
CAAATAGTTGTCTACCCCACAAGCTTCCAAACAAAGGGAATTAATGGGAAAAGTGAGATTTGCAAGGAAGGAATTATATTGTTCTCTTTGTTGCGGCTAGCTAGCTTCTGATAATTAAAGGAAGGGAACATTCAGACTTCGGATACACACATGGCTGCTGCTGCTGCTGCTGCTGCTGCTATATATGTTTTCTGTTAAATCGATCTCATCCTCTTAATTTGTTGAATATCGATCATGATGGCCGGTGATGATAACAAACCCCTCTAAATCACAACATAAATTACCAAAGTACCCCTTCTCTTTTTCTTTGATGATCCAATATGGCTTGCGTTGAGATCAGACAGCACAGCCAGTACTGCAACANCCTCAAAATCTGGTTTGGGTTGTTTCTGGTTTGTTGCCCAATTAATGTTGTTCCAGTATGACCATGGTTCCTTCTGAAAGCGGCAATAAACAAAAGAGTACTAGAGATTATGTTTTNTACAGCAACAACAGTGCTATGAACCAAGTTATTGAAGGCGGCTACAACAACAACAACAACAATTATTATAATTATTTATTAGGATCTTCTGATCATCAGTTTGTGGTGAGGCACATGGCCGAGGAGGAGGATTCATCATCAAGATCAGTACCCAACAACAACAACAACAACAACACTAGCACCACCACTCATCACAATAACAACAACGAACCCGAAGCTGTTTCCACCTCATTAAAGGAGGAAGAAGAACAAGGAGGAGGAAACAACAACAACAACAACATGAGTAACTGGCTTCAATTAAGCATTGGTTTCCACCACCAGAGTCAAACTCACTCGGCGGTTACAACCACCAAACACCACTACCCCCCTCCAACAAGCGGTTTGGAGCTGGAGTTGTTGCCACCGACCAATTGGGCCTCTTCTCCAAGGCCCAACTCGGAGGCGGTGACACCGGCGCCGAGGGGTTGCTCAAGTAGTAGTGCTGCTGCTTCTTCTAATTTGGTATTTGAACAAACGACGTCGTCTTCAACATCCTCCATGCCCATGCCAAGTGGTCCAACCTCCTTAATTGGTCAACAGCAACAGCTATTACCTCAATGGGCATTTGGTCCACTACTCCCTCATTCCATGCCACTTATAATGCCTCCTTCTTCCTCCCCTTCTTCTTATTCTTCACAGTACTCTTGTTCTTCTTTGAGGCCTCCTAATTTCCCTTTAGGACCTACTTTTAATTATCCTCATCCTCATCCTCATCCTCATGCACTACCACCCTTCCACTACTTTGCCCCTTCCTCTTCTTCATCTTCTGGGTTTAATATTAATGATCAATTTGTCGACGTGGCTGGACCAAGCTCTCAATCCCATCATGCCACTGCCACTCTCCGAGTTGTTGATCCTCCCCGGAGACCCCATTCCGGAATATGGTTTATGCTTCAAGCCTCACTAAACCAAGCCAGAGAACCGTTTTTGCCCCAAATACCCAAGAACTACCTCAGAATCAAAGATGGGAGGATGACAGTTCGGTTGCTATTGAAGTATCTGGTTAGCAAACTCAAACTGGAGAGCGAATCTGAGATAGAGATAACATGCAGAGGGCAGCAACTTTTACCTTTCTTGACGTTGCAGCATGTGAGGGATAACATTTGGACACCAAGGGACAACACCACCACAAGGCCTTTGCTTTCAGATTCCTCAACTACAGATCATGTAATGGTGCTTCATTACGTTTATTCCAAAGCAACAAGCACAGGAAAATTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	241709	251955	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.227
SRR1783600	control	0.310
SRR1783602	moderate drought stress	0.335
SRR1811619	moderate drought stress	0.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.433
DRR006520	Root Summer glycyrrhizin high producing strain	2.090
DRR006521	Root Winter glycyrrhizin high producing strain	0.765
DRR006522	Root Winter glycyrrhizin high producing strain	0.680
DRR006523	Root Summer glycyrrhizin low producing strain	3.103
DRR006524	Root Summer glycyrrhizin low producing strain	3.363
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.252
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.387

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.426
SRR2868004	Drought Stress (root)	2.940
SRR2967015	Control (root)	1.713

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.424
SRR9715740	Leaf	0.550
SRR9715741	Leaf	0.923
SRR9715739	Root	0.123
SRR9715742	Root	1.549
SRR9715743	Root	0.922

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.560
SRR8749028	MeJA induced 9h	0.445
SRR8749029	MeJA induced 9h	0.618
SRR8749030	Uninduced	0.656
SRR8749031	Uninduced	0.174
SRR8749032	Uninduced	0.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.942
SRR8400027	Control - Root	0.633