Gene detail

Gene detail information of Glyur000039s00004207

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28110.2	1.00E-164	serine carboxypeptidase-like 45
NR	KHN47533.1	0	Serine carboxypeptidase-like 45 [Glycine soja]
COG	YP_002430787.1	4.00E-27	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q93Y09\|SCP45_ARATH	0	Serine carboxypeptidase-like 45 (Precursor)
trEMBL	tr\|I1KWR7\|I1KWR7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G28910.2}

Sequence

Transcript Sequence

>Glyur000039s00004207.1
CCAGNAAAGACCATGTCTTCTCTACTTTGGAGCTCCATTGCAATGATCCCACTCCTACTCCAACTATGTTGTTGCCATGGAGTTGCACTTGCACACCCTGATAGTGTCACTCGCTTACCGGGTCAACCCCATGTTGAGTTCCATCAGTTTTCAGGTTATGTGCCTGTTGATCACAAAAACCAGAGGGCACTCTTTTTCTACTTTGCTGAAGCTCAAAAGGATGCAGCTTCCAAGCCCCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTGGGGGTTGGTGCGTTTTCAGAGAATGGACCATTTAGGCCTAAAGGAGAGGCCTTGGTTAGGAACCAATTCAGCTGGAACAGAGAGGCAAATATGTTGTACCTGGAAACACCAATTGGAGTGGGGTTCTCTTACTCAAGTGACACTTCCTCTTATGAGGCCAGGGATAATTTGGTCTTCTTGCAAAACTGGTTTGTTAAGTTCCCAGAATACAGAAACAGAAGTTTGTTCATTGTAGGAGAAAGCTATGCAGGTCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATTTAAAAGGCATTGCTCTTGGTAACCCAGTTCTAGAATTTGCAACAGATTTTAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGATTAATCTCAGACATAACATACAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTNAGGGAATACTATAGTGGCACTGTTTCTCCTATCTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACCAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCTGTATTTTCACAAACCAAAGTCCTCAATCCCCAGCAAGTTACTGAAACGATAGATGTATGTGTGGAAGATGAAACAGTCAATTACCTTAACAGGAAAGATGTTCAATCAGCTATGCATGCACGTCTGGTTGGGGTACAAAGATGGTCTGCTTGCAGCAATGTCCTGGATTATGAGTTGCGTGACTTGGAGATACCAACAATCACGGTTGTNGGCAAGCTAGTCAAGGCAGGAATACCAGTATTGGTCTACAGGTGGGTGGGTGGACTCAAGTTTATGGTGACATCCTTTCATTTGCAACCATCAGGGGAGCATCACATGAAGCTCCATTTTCACAGCCTGAGAGATCACTTGTGTTATTCAAGTCCTTCTTGGAAGGCCGAGCTCTACCAGAAGAATTTTGATTATGTGTTGAGAAGAGTCTCTAAGATAATTGTTTGTATTGTAGTTAAACCTTTAGAGACTGAATTGGATTTGTTTGATTTGTTAAATCAGTCCTTCTCATTTTCAAGTGTANAAAATTTTGTAAAGTGCTCAAGCAAGAAGGGAGGAAAAATGTGTTTTCTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	206556	209991	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004207.1	PF00450.17	Peptidase_S10	36	365	1.00E-95
Glyur000039s00004207.2	PF00450.17	Peptidase_S10	117	340	9.00E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.509
SRR1783600	control	3.465
SRR1783602	moderate drought stress	2.825
SRR1811619	moderate drought stress	2.704

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.932
DRR006520	Root Summer glycyrrhizin high producing strain	15.026
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	6.612
DRR006524	Root Summer glycyrrhizin low producing strain	6.230
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.507
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.607

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.511
SRR2868004	Drought Stress (root)	4.599
SRR2967015	Control (root)	8.652

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.935
SRR9715740	Leaf	0.044
SRR9715741	Leaf	1.094
SRR9715739	Root	2.837
SRR9715742	Root	4.924
SRR9715743	Root	4.493

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.857
SRR8749028	MeJA induced 9h	0.094
SRR8749029	MeJA induced 9h	0.227
SRR8749030	Uninduced	0.153
SRR8749031	Uninduced	1.107
SRR8749032	Uninduced	0.321

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.045
SRR8400027	Control - Root	51.063