Gene detail

Gene detail information of Glyur000039s00004205

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13300.1	0	ARF GTPase-activating protein
NR	XP_006603003.1	0	PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max]
COG	YP_008545044.1	4.00E-11	ankyrin [Sulfuricella denitrificans skB26]
Swissprot	tr\|Q5W7F2\|AGD3_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD3
trEMBL	tr\|I1N4Y3\|I1N4Y3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G51810.1}

Sequence

Transcript Sequence

>Glyur000039s00004205.1
ATACAATGCATGGAGGAAAGTGCTGAATCTCTGAGAGAGAGAAGTTTGAGATTTTACAAAGGATGTAGAAAATACACGGAAGGACTTGGGGAGGCATATGACGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGTGGGCATAATNATCCTATCAGTGTGGCTTTTNGAGGCCCTGTTATGACCAAATTCACTATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAAGTTTCTGTCACTGAGAAAAGGCACAAAAACTGATATAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATTTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCATCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAACAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGCAAATTGACCGTGAGAGTAGGTGGGCTTCTAATGGTTCTAACGGATCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTCATGCAATCTGCTGCGAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACCTAAGGGGAGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGTATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTCTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCCGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATTAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCGACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTCAGTTCTCAGATTCCTGAAAGGTTGTTACCTGCAAGTCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGACCACTCTGCTGTTGAAGAATGTGCAGCTGATAAATGTCTTGCTTCTGCACATCTGGAGCGCCCCTCAAGAAGTTTGCATCAGCAGCGATCCTGTAATAAAAGTGAGAAACCAATTGATGTGTTGCGAAGAGTGTGTGGGAATGATAGATGTGCTGATTGTGGGGCCCCTGAACCCGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGCTCTGGTGTGCATCGGAACCTTGGTGTACACATTTCAAAGGTCCGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCTAATTCAGTCTGGGAGGAACTATTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTTGAGCAAGTCTGATAAACAACTGATGCTTTTCATCTCCAAACCTTGTCAATCGGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTCGTTCGCAAGCCGAAGGACAATCAATACCGACTCCTAGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTCAATTCTGACGTTGATGTCAATGTTGTTTATGAGCAAACGTGCAGCAGCTCTTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGGCAAGCCATGATCACGGCTCTACTTTGGCAGGGAATACATTGGATTGGTCCTCTAATAGCTCTTTGAATTTGGTGGGTACTAAAGAAGGCCAGGCCATGGACAATCTAGATGGAGGCACACTACTTCACCTTGCTTGTGAAACTTCAGATATTGGCATGCTGGAGCTCCTCCTACAATATGGTGCNAATATTAATGCAACTGATTTGAGAGGTCAAACGCCGCTACATCGCTGTATTCTCAAAGGCAGATCTACATTTACAAGATTACTGCTTTCAAGGGGAGCGGATCCTCGAGCCGTGGATGAGCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGTTGACAGAGAAGTACATGCTCCATTGACTGATTCTAATGGATGACACTAATAGGTAAAGCCTCTGGAGCTCCAAGTACATTACATATATGGAAGATTGGATTATGTAAATTTCTATTTCATAAATTGAAAAGCTGGTTTTTTTGAAGGAAAGGCTCACTTAGTGTGAAGGGTTAAGGGAGAGTGGTAGGTTGTGATGCCTGCCCCTTGAATCATCTTGTGCAAGATAGTGCTAAGGTTTGTAATGTAAAATGGCCACATTGGTCTGAGTCAAGAGCACTGCTGTAACTGATAGCGCTCAGCCGCCCTTTGTAATATGTTGTTTGTGTATTTTTTTTTTATTTGCTTCCTTTAGTGGTGGTGAAGCTAAGCTGCGATGCATTAGGCTAGGGATTTGTGTATGCTGTGTACATTGGTTTATTTTTGTGAAGGTGTTGTGCCNGTAATTCACTTTTGTATTCTTGGATTACTTGGTGGGACATGTACTCTGAGGATGTCTCATGTCCCAGGTTCTCCATTGTTCTGATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	193040	199996	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0005096 GTPase activator activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004205.1	PF03114.13	BAR	4	201	5.50E-13
Glyur000039s00004205.1	PF00169.24	PH	279	410	2.20E-13
Glyur000039s00004205.1	PF01412.13	ArfGap	488	625	3.00E-34
Glyur000039s00004205.1	PF12796.2	Ank_2	727	803	2.30E-14
Glyur000039s00004205.2	PF03114.13	BAR	4	201	5.80E-13
Glyur000039s00004205.2	PF00169.24	PH	279	410	2.30E-13
Glyur000039s00004205.2	PF01412.13	ArfGap	514	651	3.20E-34
Glyur000039s00004205.2	PF12796.2	Ank_2	753	829	2.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.719
SRR1783600	control	10.862
SRR1783602	moderate drought stress	12.954
SRR1811619	moderate drought stress	12.651

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.976
DRR006520	Root Summer glycyrrhizin high producing strain	16.917
DRR006521	Root Winter glycyrrhizin high producing strain	13.908
DRR006522	Root Winter glycyrrhizin high producing strain	13.504
DRR006523	Root Summer glycyrrhizin low producing strain	12.594
DRR006524	Root Summer glycyrrhizin low producing strain	12.520
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.681
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.585

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.497
SRR2868004	Drought Stress (root)	19.896
SRR2967015	Control (root)	22.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.045
SRR9715740	Leaf	11.875
SRR9715741	Leaf	11.439
SRR9715739	Root	4.474
SRR9715742	Root	14.121
SRR9715743	Root	12.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.916
SRR8749028	MeJA induced 9h	5.342
SRR8749029	MeJA induced 9h	5.028
SRR8749030	Uninduced	1.256
SRR8749031	Uninduced	1.262
SRR8749032	Uninduced	0.983

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.726
SRR8400027	Control - Root	23.112