Gene detail

Gene detail information of Glyur000039s00004204.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33550.1	6.00E-80	Homeodomain-like superfamily protein
NR	XP_003551802.1	0	PREDICTED: uncharacterized protein LOC100788594 [Glycine max]
Swissprot	tr\|Q9C882\|GTL1_ARATH	6.00E-06	Trihelix transcription factor GTL1
trEMBL	tr\|I1N4Y2\|I1N4Y2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G51790.1}

Sequence

Transcript Sequence

>Glyur000039s00004204.1
AGCAAAAGCCATAAAACAAAACCTCTCTCTCTCTGTCTCTCTCTCTCTTATATCCTTCATTTTTTAGATATCTCTCTTCGTTCTTACGGAGAAAATCCATGAGCTTAGCTAATTGCTAAGTGCTAAGTGCTAAACCCTCTTTCTCTTTTTCTAAACGCCGTAACGGACATTCCCCAAAGGCACCGTCACAACACAAAACAGCCCCTCGTGCCAGTCACGTGCCATTCAAAACCCTCTTTTCTGTTATGGCTTTGGAGCACCCTGCCAATCCCAACTCCGTCGACGGCGAATCGGANGGAGCCGGTAACGGCGCACCGAATCCTTCCTCCGCCGCTGACGGCGGAGACGACGGAAGACCGACAGCGAGGCTGCCGCGGTGGACGAGGCAGGAGATACTGGTCCTCATACAGGGCAAGGCCGACGCGGAGAGACGGTTCAGACCGGGACGAGCCTCCGGTTCGGCGCTGGGTTCGGGCGAACCGAAATGGGTACTGGTGTCTACATACTGCAAAAACCACGGGGTGAACCGGGAACCGGTTCAGTGCAGGAAGCGGTGGAGCAACCTCGCCGGCGACTATAAGAAGATCAAGGAGTGGGAGTCTCAGATAAGGGACGAAACGGAGTCGTTTTGGTTGATGAGGAACGATGTGAGGAGAGAGAGGAAGCTGCCTGGTTATTTTGACCGGGAGGTGTATGATGTTCTCGATTCGCCCTCTTCCTCGGCGGCTCCGGCAGCGGCGGCGGCTCCGTCTCCGGCGAAGGTGTCGGAGGCGGCGGTGGGTGATGAGGAGGTGCACCTGTATGACAGTAATCGGAGGGTGGGTGGTGAAGATGGGTTATTCTCGGATTGTGAGAGGGACGAGGTTTTGGCTACTCCTGCTAATCATGTTCCTGCGCCTGTTCCTATCTCAGAGAAGCAATATCAACCGGTCCTCCGTGGCTGCCAAGGGGAAGACACTGCTCAAGGCGCCACCAATGAGAAAGAGCCAGCCTCAAATCCAGAAACAGGTTCTACATCTCAAGGAGGGAGGAAGAGGAAACGGTTTGCAACCGAGGGAGAGGAGGAAACATTGCAAAGTCAACTAATTGATGTCTTGGAGAAAAATGGCAGGATGCTACGTGATCAACTAGAGGCTCAGAACATGAATTTCCAGTTGGATCGGCAGCACCAGAAAGACACTGCAAGTAACATAGTTGCTGTACTCGATAAGCTTGCAGTTGCTCTGGGGAGAATTGCTGATAAATTGTAGTGCAANAAAGGATCAGAAATAGTGTACATAATAACATTTGGGGGTGTCAACATTAGTGGACTAGTGGTTCCCTTTCATTTTTGTCTCAGGATAGCTTCTAGAAGATGAATGTCACAGCTGTTTCCCCGTTTTTTTATCTCCTGGCTGCGTATACATACCACTTTTTGGTGGTTTGTTACTGCCATTATAGGATTATATACCCACATTTGGAAGTTACTGCATTTATTCTCTTCTTTCATTGAGGTTCTATGAATCTTTCCCCGGTCAATAATAGCAGTTGTACAGACAATATTACTAATTTAAGGTGCATTTTTATTAGTTGTCTTTCAATAAATTTGTGGAATTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	186517	189732	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004204.1	PF13837.1	Myb_DNA-bind_4	43	131	9.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.547
SRR1783600	control	11.195
SRR1783602	moderate drought stress	16.580
SRR1811619	moderate drought stress	16.534

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.275
DRR006520	Root Summer glycyrrhizin high producing strain	17.008
DRR006521	Root Winter glycyrrhizin high producing strain	20.229
DRR006522	Root Winter glycyrrhizin high producing strain	19.928
DRR006523	Root Summer glycyrrhizin low producing strain	17.313
DRR006524	Root Summer glycyrrhizin low producing strain	16.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.643
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.617

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.562
SRR2868004	Drought Stress (root)	16.826
SRR2967015	Control (root)	18.525

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.074
SRR9715740	Leaf	10.307
SRR9715741	Leaf	7.857
SRR9715739	Root	24.043
SRR9715742	Root	15.733
SRR9715743	Root	16.788

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.733
SRR8749028	MeJA induced 9h	15.001
SRR8749029	MeJA induced 9h	35.810
SRR8749030	Uninduced	7.688
SRR8749031	Uninduced	17.807
SRR8749032	Uninduced	23.621

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.591
SRR8400027	Control - Root	15.362