Gene detail

Gene detail information of Glyur000039s00004203

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61960.2	5.00E-89	MEI2-like protein 1
NR	XP_007139322.1	0	hypothetical protein PHAVU_008G019500g [Phaseolus vulgaris]
Swissprot	tr\|Q64M78\|OML4_ORYSJ	2.00E-169	Protein MEI2-like 4
trEMBL	tr\|V7B4C2\|V7B4C2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11316.1}

Sequence

Transcript Sequence

>Glyur000039s00004203.1
ATGCCTTCTGAAACAATGGATTTCAATAATTTGTCTTCATCATTGTTTTCCTCCGACGATATTTGTTCTTCTACTGAGAGGCAAGTTGGATTCTGGAAATCAGATAACCAACCCAAAGGCTATGATTCTGATCAAGGAGTAAAACCTAGCTTGAGTGTACAGGCAGTATCCAATTTTTCAGATAGTAGTGAAGTTAATATAATTGACACTCAGCATGAAAGCAGCCTCTTCTCAAGTTCCCTGTCGGAGTTATTTAGCAGGAAATTGAGATTATCTGTAAATAATGCTTTATATGGACATTCAGTTGATACTGTAGCATCCCACTATGAGGAAGAGAGGCTTTCTGACTCTCTTGAAGAACTTGAGGCTCAAATTATTGGAAATCTACTCCCCAACGATGATGATTTGCTTTCTGGAGTTACTGATGGGCATGAGTCGCATGACCACATCATCCGAGGCAGCACTGGCGATGACATGGATGAACTAGATCTTTTTAGTAGTGTTGGAGGGTTGGATCTGGGAGATGATGATAGTTCATCTTCTGGACAAAAGAATTCTGAAATCCTTGGTGGAGCTTGTAACAGTCAACTAGGGCTGTGTAATACCTCAATTGCTGGAGAAAACCCTTATGATGAACACCCTTCTAGAACATTATTTGTGAGGAATATTAATAATGATGTTGAAGATTCNGAATTGAAAGCTCTTTTTGAGGATAGTCCTTCCAAAAAAGATGTGAATCAGAGCACACTTGCAGTCTTTTTATATGATTCATCTATTTCAAACACTGAACTTCACCGTATATTTAATGTTTATGGAGAAATCAAGGAGATCCGTGAAAAACCACACGGTCGACATCACAAGTTAATCGAATTTTACGATTTTAGAGCCGCAGAGGCAGCTCTCCACACTTTAAATAGAAATGATACTACCAGGAAGAGGTTTAAGGTTGAGCCTAGCCAATCTAGAGACTCAGAAAGTATGATTAAACAGATCCATCCAGAATTAGAACAAAAAGAATGTAGCCTTTGTCTGCATCAGAAGAGCCCTCCTCTTAAGTCGCCAACTAGCTTCCCAGGCTTGCATGGGGTCATTAAATCTGCTAATATGGATGGTGTAAGAATTCTGGATGGTGATCCTTCTATGTGCACACCATCCATTGAAACTGCTTTTATTCATGGGGTCTCTTCAAGTGTCCCTAACACCTTACCGTCTCTAGCCAGAGCTAAATCAGATGGAAACCAATGTGAAATTATTGAATCTAGTTCTCCAGGCCATTTGAATTTTGATAGTCAGGCTGCATTAGCTTTTCATCCTCATTCCCTTCCAGAATTTCATGATGGTTTAGCTAATGGTGTTAATCATAATCCTCTTGAGGTGGCAGCTAACATCAATCTCAGAACACAGGAAAGAATAGATAACATGCAGTTTCGTCGAGTAAACTCTGATAGACGCTTCATGGAATTCAATGAATGTGTTTTAAAATCCTCTGGTAATGGATGCTGTCCTCTTCCTTGCCATCATTACAAATGGAGCAACTCCTATCAGCCTCCTGGAATGATGTGGCCAAATTCACCATCATATTTTGNTGGAGTTTGTGAAGCCCCTACCCTGCAAAGACTGCAACACCTTCCTAGGTCACCATCACATATGATGAGCACTGTTTTACCCATAAATAACCAGCATGTGCATTCAGCTTCTCTTTGGGACAGAAGACATACCTATGCAGGGGACTCTCCTCAAGCTTCTGCCTTCAATCCCAGCTCTATTGGGAATATGCGTTTTTCCAGTAATACAACAGCNCATTGTGTTGACTTTGTTCCTCATAACATCTTTCCCCATTTTGGNGGAAGCTGTGTTGACCTTCAAATCCTCCCTAATAATCTTGGACTCCNTTTCCATAACCAAAGGGGCCTGATGTTTCCTGGAAGAAACCATATGATTAATTCATTTGATACTCACAAACGTGTTAGAAGCCGTAGAAATGAAGGNGTGTCAAACTTGGCTGACATGAAACAGTTTGAACTTGATATTGACCGCATAAAGAGGGGGGAAGATAACCGAACAACGCTTATGATAAAGAACATTCCTAACAAGTCTCCTCTGTCATTGACGAACAAATGCAATGTTGGATACGCATTCATCAACATGACTAATCCTAGCTTGATTATACCGTTCTATCAGGTGTTCAATGGGAAGAAATGGGAGAAATTCAACAGTGAGAAAGTGGCATCACTAGCATATGCTCGCATACAAGGGAAAGCAGCTCTTATTGCTCACTTCCAAAATTCTAGCTTGATGAATGAGGATAAGCGCTGCAGGCCCATCCTCATNGATACTGACGGCCCTAATGCTGGTGATCAGGTATAAATTTCCTTTAACATCTAATTTTCAGTTTATACATTGCATGCATTCCTTANCTTGTTCAAGCATAACATAGAGTCTATATAGGCCAAGCCATTTAAAATTTGCAGTTCTCTACCTCAAGAGAGGAAGCTACAGATTGGCTACTAACTTTGCTAGTAACACAGGTCCCTTTCCCAATGAGTGTAAATATTCGCAACAAACCCGGAAGAGTTAGAAANGACACTAACGAGGATAACCTGCAAGGGAGCCTGCCTAATTTGGGAAACTGCCATCCCTCAGACTAAGGAAGTCACCTTTGTTTCTTCTTCCATCTCATTAATTTCAGTGGATCACTAACCTTATAAATCCAAGTGATTATTTGGTGACAATAATAAAGGTGCTCATATTAGGAGTATGTGAGTACCAATACTTCACCTTAAAAGCCAAGAAGTTTTACAGTTCCTTTGGCTTTTGTTATTAAATCCCAAACATGTTGGAGATATGAGCATCAAGATGAGCTGTCACAAGTCACAACTGTTAATGAGCAAGTCAAAANATTACATGTATAGGAGTTTCTGAAGTCTGAACATTGGAGAGGCCTTGTATAGTGGTTTGAGAGGAACTCTGAGTCTGTACCAGTTTTCCCTTTGTTTCCCCTCCTCCTCTCCCTGTTCTCCTTTTTATTCAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	171597	177500	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004203.1	PF04059.7	RRM_2	701	761	1.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.153
SRR1783600	control	5.076
SRR1783602	moderate drought stress	6.980
SRR1811619	moderate drought stress	6.924

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.172
DRR006520	Root Summer glycyrrhizin high producing strain	4.078
DRR006521	Root Winter glycyrrhizin high producing strain	1.974
DRR006522	Root Winter glycyrrhizin high producing strain	1.893
DRR006523	Root Summer glycyrrhizin low producing strain	3.303
DRR006524	Root Summer glycyrrhizin low producing strain	3.131
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.418
SRR2868004	Drought Stress (root)	7.699
SRR2967015	Control (root)	9.006

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.856
SRR9715740	Leaf	1.847
SRR9715741	Leaf	1.196
SRR9715739	Root	0.681
SRR9715742	Root	3.631
SRR9715743	Root	2.800

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.863
SRR8749028	MeJA induced 9h	2.751
SRR8749029	MeJA induced 9h	3.115
SRR8749030	Uninduced	0.694
SRR8749031	Uninduced	0.775
SRR8749032	Uninduced	1.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.986
SRR8400027	Control - Root	6.413