Gene detail information of Glyur000039s00004198 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29540.2 | 1.00E-35 | RNApolymerase 14 kDa subunit |
| NR | NP_001238111.1 | 4.32E-61 | uncharacterized protein LOC100500695 [Glycine max] |
| COG | NP_577779.1 | 2.00E-08 | DNA-directed RNA polymerase subunit L [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|Q38859|NRPBB_ARATH | 6.00E-11 | DNA-directed RNA polymerases II, IV and V subunit 11 |
| trEMBL | tr|C6T2I2|C6T2I2_SOYBN | 2.00E-61 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU15848.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00039 | 150039 | 152959 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000039s00004198.1 | PF13656.1 | RNA_pol_L_2 | 11 | 85 | 1.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.240 |
| SRR1783600 | control | 11.217 |
| SRR1783602 | moderate drought stress | 21.104 |
| SRR1811619 | moderate drought stress | 20.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.816 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.317 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 67.018 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 64.406 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.095 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.145 |
| SRR2868004 | Drought Stress (root) | 26.308 |
| SRR2967015 | Control (root) | 28.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.231 |
| SRR9715740 | Leaf | 23.643 |
| SRR9715741 | Leaf | 25.814 |
| SRR9715739 | Root | 17.482 |
| SRR9715742 | Root | 21.254 |
| SRR9715743 | Root | 19.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.417 |
| SRR8749028 | MeJA induced 9h | 13.320 |
| SRR8749029 | MeJA induced 9h | 48.838 |
| SRR8749030 | Uninduced | 18.160 |
| SRR8749031 | Uninduced | 35.923 |
| SRR8749032 | Uninduced | 40.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.159 |
| SRR8400027 | Control - Root | 18.493 |