Gene detail

Gene detail information of Glyur000039s00004184

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15900.1	2.00E-101	TRICHOME BIREFRINGENCE-LIKE 19
NR	XP_007139339.1	0	hypothetical protein PHAVU_008G021100g [Phaseolus vulgaris]
Swissprot	tr\|Q9M896\|TBL20_ARATH	2.00E-125	Protein trichome birefringence-like 20
trEMBL	tr\|V7B389\|V7B389_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11333.1}

Sequence

Transcript Sequence

>Glyur000039s00004184.1
ATGAGAAATGATCAGTACAAGCTGACTCAACACCGTTTCATCAAACCTCTTGACTTCATCTCAACCATGAGGTTTCGGTCCATACAACTTTTCAATGGGAAGCACACCACATCAGGAAACACTACCAACAAGAGTGTTATCCTGCTTCCATTCGTCGTGCTTTTCATCATGTTTCCATTTTCTCTTATGAAATTCTCACATCAATCATCATCATCNTCATCATCTCCCAATAAGTTATTATATGCCACCACAGCAGCAGCTAGTTTGAATTTGAGCCACANAGAAATAAAAAGATGCAACATCTTCTCTGGAGAATGGGTTCCTTATGGGAAAGGGGTACCTTATTATGACAATGAGACATGCAATTTGATAACAGATCAGCAGAATTGCATCAAATTTGGGAGACCTGACAGAGAGTTCCTCAAGTGGAGGTGGAAACCTGATGAGTGTGAGCTCCCACTGTTTAATGCAACTCAATTCTTAAGGCTTGTCAAAGGAAAGTCCATGGCCTTTCTTGGAGACTCTGTGGGAAGAAACCAGATGAATTCTTTGTTGTGCCTCCTAAATCACGTGGCTCGTCCTGAGGATATTTCCAACAGATACACAACGGATGCCATATATTTCCGACGGTGGTTCTATGCAGATTACAATTTCACCCTTTCAACACTCTGGTCCCCATTTTTGGTTAGAGCCAGTGACGCTGACCTCAGTGGTCATTCTAACAACGGCCTCATGAGCTTATATCTGGATAAGCCAGATGAAGCATGGGTCAGTGAGATTGTGAATTTCGATTTTGTCATTATCTCAGCTGCCAATTGGTTCTTTCGCCCACTACTCTTCTACCAAAATGCCCAACTTGTTGGCTGCCACAAATGTAACATTAACAACATCACAAACCTCGCTCACTACTATGGTTATAGGAAGGCATTCCAAACCACATTTAGAACCATTCTGAACCTTAAAGGGTATAAGGGTGTGACATTTTTGAGAACATTTTCCCCTGCTCATTTTGAGAATGCTGATTGGGACAAAGGAGGGAGTTGTGAGAGGACAAGGCCTTATACAAAGGAAGAGATGAAGTTTGATGGGTATATTTTCGAGACATATGTGACTCAAGTTGAGGAGTTTGTAAAAGCTGAGGAGGAGGCTAGGAAGAAGGGTTTGTTGTTTTTGATGCTCAATACGACTGAGATGATGCTGAGGAGGCCTGATGGACACCCCAATAACCATGTCTATGGGTATAATTCAAAGAATGTTAACCATAATAATAAATACAATGATTGTGTTCATTGGTGCTTGCCGGGGCCTATTGACACATGGAATGAGTTGTTGCTCTATGTGTTGGAAATGCAGAGTCACATGAAGTCTTTCATTTCAATACAGAGATTTGTCTAGAGGAACAATTAATATCAGATTTGTTGCCCATGTTAAACAAAACAATTAAACCTATGTATGAAGGGCAAGCTAAATGTTGTATAGTGCTTCTTAANTTCTTGTGTTGACAAACAGAGGAGATGGGAAGGGCAAAGCTAAATGTATTTATTTAGTTAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	34454	44006	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004184.1	PF14416.1	PMR5N	97	151	3.80E-20
Glyur000039s00004184.1	PF13839.1	PC-Esterase	152	448	8.20E-54
Glyur000039s00004184.2	PF14416.1	PMR5N	80	133	6.40E-22
Glyur000039s00004184.2	PF13839.1	PC-Esterase	134	423	3.10E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.449
SRR1783600	control	42.957
SRR1783602	moderate drought stress	45.376
SRR1811619	moderate drought stress	45.144

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.206
DRR006520	Root Summer glycyrrhizin high producing strain	57.694
DRR006521	Root Winter glycyrrhizin high producing strain	10.954
DRR006522	Root Winter glycyrrhizin high producing strain	11.091
DRR006523	Root Summer glycyrrhizin low producing strain	61.739
DRR006524	Root Summer glycyrrhizin low producing strain	61.305
DRR006525	Leaf Summer glycyrrhizin high producing strain	123.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	122.374

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.500
SRR2868004	Drought Stress (root)	63.418
SRR2967015	Control (root)	47.662

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.371
SRR9715740	Leaf	43.396
SRR9715741	Leaf	26.754
SRR9715739	Root	41.087
SRR9715742	Root	35.262
SRR9715743	Root	37.143

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.286
SRR8749028	MeJA induced 9h	24.576
SRR8749029	MeJA induced 9h	16.731
SRR8749030	Uninduced	20.575
SRR8749031	Uninduced	9.625
SRR8749032	Uninduced	5.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.808
SRR8400027	Control - Root	87.254