Gene detail

Gene detail information of Glyur000039s00004178

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23710.1	3.00E-46	DNA binding;DNA-directed RNA polymerases
NR	XP_003551792.1	1.15E-158	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Glycine max]
trEMBL	tr\|K7MV58\|K7MV58_SOYBN	4.00E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G51420.3}

Sequence

Transcript Sequence

>Glyur000039s00004178.1
TCGCCTATATCTACAAAGATACTCCAACAAAATATTTACCATATATCTTAAACAATATTACAAGATGTTTTATAAAAACCTGAAAATAAATGATATAACAACGTGGCAGAGGTGTGGTAGATCAAGTAAAGTCAATCTAAAGCCCACATTCTCTCCTTGAAGCCCAACCCAATAACACAAACTAAGCCAGCCCAATGAGAAACCTAGAACGAATGAATTTCGTTCTTCTTCCTTCTCGGATGTGCCCACACACACAGGACTCAATCGTTGCTGCTTCTCATTTTTAACAAACGCAGTCAGTCTCTGTTGTTTCGACTCTCCGATACGATAGTAAGCCACCCCCGTCGCGATCCTTGGTCCTGATGAGTCGTGTGCAAGGATCTTCTTCCCTTAAACGGAAACGACAAGAGTTGGCTTTAGTGTCCGAGTCCTTGACGGATGGAGAGCGTATACTCTATAACCTCATACATAGCAAGAAAGACATGGGGATCTGGACAGGAGACATGAAGCGAGAAACAAACCTTCCTGACAACGTGGTAAAAAAATCCCTTAAGTTGCTTCAGTCCAAGAATCTGATAAAGGAGGTTGTCAACATTCAAAACAAAGGGAGAAAGCACTACATGGCAGCAGAATTTGAGCCTTCCAAGGAAATCACTGGTGGGGATTGGTATAGTGAAGGGAGTCTTGATACTGAGTTCATAAACCTTGTAAAGGATGTGTGCTTGAAGTACATTTTCAGGCAGAAAGTTACCACGCGTGATGGAGTTTTAGAGTGGAGCAGAAAGAGCGGAGTTTTCTCTGCTGAAGTCACAACACAGCAAATAGAAGAGATTTTGCGAACTTTGGTTTTGGATGATGAGATCATTGAGGTGAAGAGTACTGGATTTGGGGATTTCGCGTCTGTTCCTGTTGGCAGAGTNTGTTACAAATGCAAAAGCAAGGGCGGAGTTAGGGGGGAACAGAAACCCGGTGCCATGGCCTCCATTCCATGTGGAGTTTGTCCACGGNTTAANTATTGCACACCTGATGGCATTATCTCCCCAAGAACATGTGACTATTATCAGAAATGGTTGGACTTCTAGATGAGTCAAATACCAGTTTGTAGTTTTGAAATGACCCTCCAAGTTTTCACTCAACATATAGCAGCTATCATTTTTTTTTTCTTTNTAACTTTATTGCTTAATGTATCAAAGATCTTTCTGCATTAAAATGNAAGCNGTCAAAGCAAATTGACTCTCAATTGGTTGTAAAGTTGTGCATATTGATTGCACAGGTTAGAAAATCTTGGTCAGTAATGCCTGTTGGTGATCATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	278	6421	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004178.1	PF05158.7	RNA_pol_Rpc34	11	130	5.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.767
SRR1783600	control	16.297
SRR1783602	moderate drought stress	16.545
SRR1811619	moderate drought stress	16.492

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.607
DRR006520	Root Summer glycyrrhizin high producing strain	32.481
DRR006521	Root Winter glycyrrhizin high producing strain	48.115
DRR006522	Root Winter glycyrrhizin high producing strain	47.418
DRR006523	Root Summer glycyrrhizin low producing strain	17.877
DRR006524	Root Summer glycyrrhizin low producing strain	18.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.547
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.439
SRR2868004	Drought Stress (root)	21.389
SRR2967015	Control (root)	19.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.819
SRR9715740	Leaf	13.324
SRR9715741	Leaf	12.412
SRR9715739	Root	3.278
SRR9715742	Root	11.661
SRR9715743	Root	9.554

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.824
SRR8749028	MeJA induced 9h	24.494
SRR8749029	MeJA induced 9h	26.298
SRR8749030	Uninduced	8.766
SRR8749031	Uninduced	8.006
SRR8749032	Uninduced	5.561

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.668
SRR8400027	Control - Root	20.558