Gene detail

Gene detail information of Glyur000038s00004512

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41040.1	5.00E-176	HXXXD-type acyl-transferase family protein
NR	XP_003528100.1	0	PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like isoform X1 [Glycine max]
Swissprot	tr\|Q94CD1\|HHT1_ARATH	0	Omega-hydroxypalmitate O-feruloyl transferase
trEMBL	tr\|I1KC05\|I1KC05_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G17590.1}

Sequence

Transcript Sequence

>Glyur000038s00004512.1
ATGGCAAATGGGGAAATCTCTAATTACACTGAGCTGAATGTAAGGCAAGGAGAACCAACTCGAGTTAAGCCAGCAGAGGAAACAGAAAAGGGACTCTACTTCCTTTCAAACCTTGACCAGAACATTGCAGTTCCAGTTCGCACGGTTTATTGCTTCAAATCAGCATCGAGAGGAAACGAGGATGCTGCACGAGTCATCAAGGATTCCTTGTCAAAGATTCTTGTCCCTTATTACCCCATGGCAGGCAAGTTGATGATCAGCTCAGAAGGGAAGTTGATAGTCGATAACAACACAGGGGAAGGTGCAGTTTTTGTTGAGGCTGAAGCTGATTGTGACATACAAGACATTGGGGACTTAACAAAACCAGACCCTGATACCCTTGGGAAACTCGTTTATAACACCCCAGGTGCTCGGAGCATATTAGAGATGCCTCTTATGACAGTTCAGGTGACAAAGTTCAAATGTGGAGGATTCACTTTGGGGCTAAACATGATCCACTGTATGAAAGATGGACTATGTGCAATGGAGTTTGTGAATGCATGGAGTGAGACAGCACGAGGTTTGGACATAAAGACTCCACCATTTCTTGACCGAACCATCCTCAAAGCACGTGACCCTCCCAAAATAGAGTTCCAACACCACGAATTCGATGAGATTGAAGACATCTCAAACACTGAAAACCTCTACGAACAAGAGAAGATGTTCTACAGATCCTTCTGTTTCGACCCGGAGAAGCTCGAACAGCTCAAGAAAAAGGCCACTGAAGATGGGGTTTTAGAAAAGTGCTCAAGTTTTGAAGCACTCTCAGCTTTTATATGGAGAGCAAGAACAGAAGCATTAAAGATGCACCCTGATCAGAAAACAAAGCTACTCTTTGCAGTTGATGGAAGGTCAAGATTCATTCCCCCAATACCAGAAGGGTATTTTGGGAACGCTATTGTGCTGACAAATTCACTTTGCAATGCAAGTGAGTTATTGGGGAACCCTCTTTCATTTACTGTGGGATTGGTTCGAAAGGCNATTGAGATGGTCAATGACAGTTATATGAGATCTGCTATTGATTATTTTGAAGTTACAAGGGCTAGGCCTTCCTTAACAGCTACCCTTTTGATCACAACTTGGACTAGGTTGTCTTTCCATACTACTGATTTTGGATGGGGAGAACCTCTGTGTTCTGGTCCTGTTACCTTGCCTGAGAAACAGGTCATTCTGTTCTTGTCACAGGGTCAAGAAAGGAAAAGCATCAATGTGCTCCTTGGTTTGCCTGCTTCTGCTATGGAAAGTTTTGAAGCATTGGTGATGCAGATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	481822	483769	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15400	HHT1	EC:2.3.1.188	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004512.1	PF02458.10	Transferase	13	430	7.40E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.537
SRR1783600	control	24.260
SRR1783602	moderate drought stress	22.494
SRR1811619	moderate drought stress	21.705

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.169
DRR006524	Root Summer glycyrrhizin low producing strain	0.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.083
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.141

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	69.975
SRR2868004	Drought Stress (root)	81.278
SRR2967015	Control (root)	103.925

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.088
SRR9715739	Root	41.945
SRR9715742	Root	53.017
SRR9715743	Root	52.567

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.464
SRR8749028	MeJA induced 9h	1.273
SRR8749029	MeJA induced 9h	0.533
SRR8749030	Uninduced	0.629
SRR8749031	Uninduced	1.203
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	161.404
SRR8400027	Control - Root	133.469