Gene detail information of Glyur000038s00004511 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63550.2 | 7.00E-59 | DEK domain-containing chromatin associated protein |
| NR | XP_004501721.1 | 0 | PREDICTED: protein DEK-like [Cicer arietinum] |
| trEMBL | tr|K7KL81|K7KL81_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G37460.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 472744 | 478710 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004511.1 | PF08766.6 | DEK_C | 514 | 566 | 4.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.998 |
| SRR1783600 | control | 30.071 |
| SRR1783602 | moderate drought stress | 28.599 |
| SRR1811619 | moderate drought stress | 28.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.037 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.050 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.093 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.074 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.388 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.135 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.335 |
| SRR2868004 | Drought Stress (root) | 63.758 |
| SRR2967015 | Control (root) | 68.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.853 |
| SRR9715740 | Leaf | 27.700 |
| SRR9715741 | Leaf | 29.962 |
| SRR9715739 | Root | 3.677 |
| SRR9715742 | Root | 26.037 |
| SRR9715743 | Root | 21.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.549 |
| SRR8749028 | MeJA induced 9h | 103.532 |
| SRR8749029 | MeJA induced 9h | 75.607 |
| SRR8749030 | Uninduced | 48.603 |
| SRR8749031 | Uninduced | 42.004 |
| SRR8749032 | Uninduced | 35.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.765 |
| SRR8400027 | Control - Root | 53.414 |