Gene detail information of Glyur000038s00004509 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50720.1 | 2.00E-25 | HVA22 homologue E |
| NR | XP_004501718.1 | 4.72E-37 | PREDICTED: HVA22-like protein e-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FED2|HA22E_ARATH | 1.00E-31 | HVA22-like protein e |
| trEMBL | tr|G7J3D8|G7J3D8_MEDTR | 2.00E-36 | TB2/DP1, HVA22 family protein {ECO:0000313|EMBL:AES73039.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 459774 | 461321 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004509.1 | PF03134.14 | TB2_DP1_HVA22 | 13 | 66 | 2.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.154 |
| SRR1783600 | control | 0.226 |
| SRR1783602 | moderate drought stress | 0.178 |
| SRR1811619 | moderate drought stress | 0.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.895 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.213 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.760 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.237 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.210 |
| SRR2868004 | Drought Stress (root) | 8.972 |
| SRR2967015 | Control (root) | 8.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 64.606 |
| SRR9715740 | Leaf | 73.878 |
| SRR9715741 | Leaf | 49.991 |
| SRR9715739 | Root | 0.260 |
| SRR9715742 | Root | 1.419 |
| SRR9715743 | Root | 0.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.061 |
| SRR8749028 | MeJA induced 9h | 0.561 |
| SRR8749029 | MeJA induced 9h | 0.418 |
| SRR8749030 | Uninduced | 0.309 |
| SRR8749031 | Uninduced | 0.409 |
| SRR8749032 | Uninduced | 0.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.247 |
| SRR8400027 | Control - Root | 5.410 |