Gene detail

Gene detail information of Glyur000038s00004506

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50740.1	1.00E-51	Heavy metal transport/detoxification superfamily protein
NR	XP_003523156.1	6.45E-98	PREDICTED: axoneme-associated protein mst101(2)-like [Glycine max]
Swissprot	tr\|Q9SZN7\|HIP26_ARATH	8.00E-11	Heavy metal-associated isoprenylated plant protein 26 (Precursor)
trEMBL	tr\|I1JXL6\|I1JXL6_SOYBN	2.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G37410.1}

Sequence

Transcript Sequence

>Glyur000038s00004506.1
CACAAAAGAAAGAGAAAGAGAGCCTACAACTACAAGCATCCAAAAAATAAACACTANGAGGGGAAAATAACAGCGAAAGTAGAAGCTCTATTAAGCTTATCTCAGCGGCAGAGTTCCTCTGTGAAGCTTTGAACAATTGAACCNACAGGGAGAGAGAGTAACACCAATGGGGGAGGAAGAAAAGAAACCAGAGGAAACCAAAGCGGAGGAAAAAAAACCAGAGGAACCGAAAAAGGGNGAAGAGGAGAAGAAAGAAGAAAAAGGAGAAGAAAACAAGCCTGCGGAAAAACCAGAGGAACCAAAAGATGGCAAAGAATCCAAAGCCCAAGCTGAAGCTGCTCCTCCTCCGGTGCCACCAGAGATTGTGCTCAAAGTGTTCATGCATTGTGAAGGTTGTGCTCGCAAGGTTCGTCGGTCCCTCAAAGGATTCCCAGGGGTTGAAGATGTAATGACGGATTGCAAATCTCACAAGGTGGTGGTTAAAGGAGACAAAGCGGATCCATTGAAGGTTTTGGAGAGAGTTCAGAGGAAGACTCACAGGCAGGTTGAGCTTCTTTCTCCGATCCCAAACCCTGCAGAGGAAGAGAAGAAGCCCGAGCCCGAGGAGGAAAAGAAGAAAGAAGAGCCGCCTCAGATTGCTGTCACGGTTGTTCTCAAAGTTCACATGCATTGCGAGGCGTGGGTGGAATCGGTGGAACCCGATCTGAAGAACTCGCAGGTTAGCGTGAAGGGAGTGTATGACCCTGCGATGTTGGTTGAATTCGTGCACAAGCGATGTGGGAAGCATGCAGTGATNGTGAAGCAAGAAACGGAGGAGAAGAAAGTAGTGGAGGAAGAAGCCAAAGAGGAAAAGAAAGCAGAAGAAGGTGAGAAAGAGAATAAGAAGAGCGAAGAAGGGGAGGAGGAAAACAAGGAGAAGAAAGAGGAAGCAGTGGGTACTGAGGCCAAACCACAGGGTGAGACAGAGGCAGTTATAGAAGAGACCAAGGTTGAGGCAGAGGTGAAGAAAAATGAGCATTACTATAACCCACCAAGGTATGGCATGGACTTGTATGCATACCCTGCATACCCTGCACATTACCAAGCTTATCCACCGCAGATTTTCAGTGACGAGAACCCAAATGCCTGCACTGTCATGTAAAAAAGAAATTATTGAGGAATGTCAGGGGTGATGTGGGAAATCATGAAAAATTGTCAAGTTGGGTGCGTGACTAACCCCTTGCTTGCGTGACTTTTGGCCCCCTGTACTATTTCTGCTAAACATCAAAAAGTGCAAGTATAAGCTACACATGTGCCGTAGAATTTTTGTAATATTTGTACAGTACTTCTTCTTCAAGTTGAAGTTACTGTTTTTTTTTTGTTTAAAAATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	406246	408498	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004506.1	PF00403.21	HMA	68	122	2.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.258
SRR1783600	control	30.671
SRR1783602	moderate drought stress	22.685
SRR1811619	moderate drought stress	21.677

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.685
DRR006520	Root Summer glycyrrhizin high producing strain	56.911
DRR006521	Root Winter glycyrrhizin high producing strain	134.995
DRR006522	Root Winter glycyrrhizin high producing strain	127.285
DRR006523	Root Summer glycyrrhizin low producing strain	58.780
DRR006524	Root Summer glycyrrhizin low producing strain	56.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.578
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.005
SRR2868004	Drought Stress (root)	24.197
SRR2967015	Control (root)	23.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.434
SRR9715740	Leaf	0.844
SRR9715741	Leaf	2.397
SRR9715739	Root	1.946
SRR9715742	Root	12.026
SRR9715743	Root	12.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.069
SRR8749028	MeJA induced 9h	54.305
SRR8749029	MeJA induced 9h	105.440
SRR8749030	Uninduced	5.134
SRR8749031	Uninduced	2.082
SRR8749032	Uninduced	11.209

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.113
SRR8400027	Control - Root	34.457