Gene detail information of Glyur000038s00004500 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50640.1 | 3.00E-94 | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein |
| NR | XP_003602797.1 | 0 | Meiotically up-regulated gene 70 protein [Medicago truncatula] |
| COG | YP_004781907.1 | 1.00E-11 | putative signal transduction protein with CBS domains [Pyrolobus fumarii 1A] |
| Swissprot | tr|P0DH79|Y5064_ARATH | 2.00E-153 | CBS domain-containing protein CBSCBSPB5 |
| trEMBL | tr|G7J3V3|G7J3V3_MEDTR | 0 | CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein {ECO:0000313|EMBL:AES73048.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 362638 | 367275 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004500.1 | PF00571.23 | CBS | 55 | 101 | 9.20E-06 |
| Glyur000038s00004500.1 | PF00571.23 | CBS | 113 | 160 | 3.20E-06 |
| Glyur000038s00004500.1 | PF00564.19 | PB1 | 233 | 315 | 2.00E-11 |
| Glyur000038s00004500.2 | PF00571.23 | CBS | 5 | 51 | 1.30E-05 |
| Glyur000038s00004500.2 | PF00571.23 | CBS | 63 | 110 | 2.60E-06 |
| Glyur000038s00004500.2 | PF00564.19 | PB1 | 183 | 265 | 1.60E-11 |
| Glyur000038s00004500.3 | PF00571.23 | CBS | 28 | 75 | 3.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.318 |
| SRR1783600 | control | 3.188 |
| SRR1783602 | moderate drought stress | 7.133 |
| SRR1811619 | moderate drought stress | 6.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.698 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.785 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.251 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.764 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.003 |
| SRR2868004 | Drought Stress (root) | 38.417 |
| SRR2967015 | Control (root) | 36.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.708 |
| SRR9715740 | Leaf | 24.250 |
| SRR9715741 | Leaf | 35.432 |
| SRR9715739 | Root | 4.669 |
| SRR9715742 | Root | 8.810 |
| SRR9715743 | Root | 8.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.937 |
| SRR8749028 | MeJA induced 9h | 5.652 |
| SRR8749029 | MeJA induced 9h | 5.037 |
| SRR8749030 | Uninduced | 10.459 |
| SRR8749031 | Uninduced | 15.672 |
| SRR8749032 | Uninduced | 13.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.912 |
| SRR8400027 | Control - Root | 14.443 |