Gene detail information of Glyur000038s00004496 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24930.1 | 3.00E-66 | thylakoid lumenal 17.9 kDa protein, chloroplast |
| NR | XP_003523151.1 | 4.33E-133 | PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic-like [Glycine max] |
| COG | YP_007102542.1 | 3.00E-06 | hypothetical protein Pse7367_1838 [Pseudanabaena sp. PCC 7367] |
| Swissprot | tr|Q9SW33|TL1Y_ARATH | 6.00E-89 | Thylakoid lumenal 17.9 kDa protein, chloroplastic (Precursor) |
| trEMBL | tr|I1JXK7|I1JXK7_SOYBN | 2.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G37330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 351696 | 353410 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.912 |
| SRR1783600 | control | 5.899 |
| SRR1783602 | moderate drought stress | 13.319 |
| SRR1811619 | moderate drought stress | 13.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.894 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.719 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.586 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.030 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.748 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 73.114 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 72.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.502 |
| SRR2868004 | Drought Stress (root) | 10.708 |
| SRR2967015 | Control (root) | 6.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 69.044 |
| SRR9715740 | Leaf | 62.144 |
| SRR9715741 | Leaf | 68.586 |
| SRR9715739 | Root | 7.590 |
| SRR9715742 | Root | 4.686 |
| SRR9715743 | Root | 3.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.584 |
| SRR8749028 | MeJA induced 9h | 4.733 |
| SRR8749029 | MeJA induced 9h | 3.760 |
| SRR8749030 | Uninduced | 2.732 |
| SRR8749031 | Uninduced | 0.746 |
| SRR8749032 | Uninduced | 1.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.466 |
| SRR8400027 | Control - Root | 13.879 |