Gene detail

Gene detail information of Glyur000038s00004487

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23520.1	6.00E-18	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_004501702.1	0	PREDICTED: uncharacterized protein LOC101502362 [Cicer arietinum]
COG	NP_616873.1	8.00E-20	hypothetical protein MA1950 [Methanosarcina acetivorans C2A]
trEMBL	tr\|I1KC26\|I1KC26_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G17810.1}

Sequence

Transcript Sequence

>Glyur000038s00004487.1
CAAAAGGAATAATTCTGGGGAATATTGTGCAAACCATGCTTAAGGCAAGAGGAAGATATCACCATTTCATCATCACCTCCTATTCAAAAGCCTTGTTGCTATTGTCTTTGTTGGTGTAATCTTCTGACTTTGTTTGATCTCTTAATTACTTTGCAATAAGAGTGAGTTTGGNTAGGATTATGTCTTCTTTTCCAACATGCTTCCTCCTTAATCCTCACATGATTGCTTTAATATTTTAGAACCCACTTCTGCTTAGGGGATCTTTCAACAAGGCTTTTACACATTTAGACCTCTTTTTCTTTTGTGTTTTTCTTTTGGGGGTGGCCATCTTTCTGCCTTCTACCTAAGATTTTCTCAGGTATTATTAGACACTGAAAAATAGCTATCTTATGTGGTGAAAACAAATATTACTATGGGAACAAACAGGCAGGAGCATCAAATTTCAGACGGAGGATCTGAGGAGATGGTAGAAAATGAAGTCAAGGACACCAGGAAAGGTCCAACACACAAATTAATAGCAGAGAGTTGCAAATCAAACAGCTTGGTCATTAAGAAACAACATGTGATGATTCCTCCTCACATCATAGCTGAAGCAATATCAACTATCCGCGATATTGACATTAGATGGTCAGGTCCAATCACACCAAAAGAGATGGAATATGTTCAACAGTATGTGCTAGCGAAGTACCCGGAATATGCAGGGCTGATTGAAGGAGATGGAAATGGGATAGACTTATCTAGCTTAATCATCAATGAGGAGCCTTCAGAACACATGCCAGATGATAGGGGCAAGTCACCAAGAGGGACTCCTAGAGAGTCTTCTGCATACTTGTTTGGCAGCAGTAATCTCCCCGAATCGGATAGGGCCAAGATCCAGTTGGAGCCATCAAGGTTACTAGATATTCTCAACAAGAAATCCTCATTTCCCGGAAGCTTCATCTCGATCCCGGAAATCCAAGCGCGAAACAAGGTTTTGAAGCCTTATGGTTTGACTGATGATGAGTACCTGGTTCTCTTCACTCCAAGCTACAAGGATGCTATGATGTTGGTGGGAGAAAGTTACCCTTTTGTTAAGGGGAACTACTACATGACCATTCTTGCTCAGGAAGAGGATTACATCAGGGAATTTGCTTCTTTTAAGGAGTCAAAGGTGATCCCAGCACCAAAGACTTGGTTGGACTTGAGGATCAGAGGGTCTCAGCTGAGCCAAAACTTTAGGAGGAGGTGTAAGATCAGCTCAAAAGGCTTGTTCTCTTATCCAGCAGATGCAAGTGCAACAATGCATTGGATCTCAGAGGCTCATAGGAACAGTTGGCATGTGCTGCTTGATGCATCAGCATTTGTAGTGGGAAAGGATCGGCTACATCTCGCACTTCACCGCCCTGATTTTGTGATCTGTAGTATTGACAACACTCATTCCAACCCTTCAAGAATCACTTGCCTCTTGGTGAGGAAGAAATCCTTTGATACCTCAGCTGCTTCATCTCAGGTAGTTGTTGAATGAATGAATGAGAAGGGGTACTTGGCTTGTTATTTTAGATGTCATTTGAACTGCTGAGCAATTAGTGTGTTTGGTATCATGGACTCTCAGATGCCATGAATTTTCCTACATACATGTACAAGACCACTCATATGTTACTGGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	323192	325088	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.018
SRR1783600	control	2.206
SRR1783602	moderate drought stress	1.569
SRR1811619	moderate drought stress	1.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.834
DRR006520	Root Summer glycyrrhizin high producing strain	2.738
DRR006521	Root Winter glycyrrhizin high producing strain	1.220
DRR006522	Root Winter glycyrrhizin high producing strain	1.123
DRR006523	Root Summer glycyrrhizin low producing strain	2.546
DRR006524	Root Summer glycyrrhizin low producing strain	2.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.896
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.857

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.871
SRR2868004	Drought Stress (root)	63.951
SRR2967015	Control (root)	41.208

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.262
SRR9715740	Leaf	5.656
SRR9715741	Leaf	6.000
SRR9715739	Root	1.834
SRR9715742	Root	2.002
SRR9715743	Root	2.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.173
SRR8749028	MeJA induced 9h	0.976
SRR8749029	MeJA induced 9h	0.166
SRR8749030	Uninduced	0.538
SRR8749031	Uninduced	0.504
SRR8749032	Uninduced	0.256

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.812
SRR8400027	Control - Root	15.991