Gene detail information of Glyur000038s00004486 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24900.1 | 1.00E-95 | |
| NR | XP_004501701.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein 84-like [Cicer arietinum] |
| Swissprot | tr|F4JRR5|TTL_ARATH | 1.00E-134 | TITAN-like protein |
| trEMBL | tr|G7J3W4|G7J3W4_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AES73059.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 317451 | 321439 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004486.1 | PF14968.1 | CCDC84 | 29 | 426 | 2.00E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.777 |
| SRR1783600 | control | 7.852 |
| SRR1783602 | moderate drought stress | 12.931 |
| SRR1811619 | moderate drought stress | 12.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.141 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.285 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.653 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.601 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.940 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.756 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.323 |
| SRR2868004 | Drought Stress (root) | 30.494 |
| SRR2967015 | Control (root) | 29.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.746 |
| SRR9715740 | Leaf | 16.386 |
| SRR9715741 | Leaf | 21.131 |
| SRR9715739 | Root | 2.200 |
| SRR9715742 | Root | 7.481 |
| SRR9715743 | Root | 6.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.003 |
| SRR8749028 | MeJA induced 9h | 24.713 |
| SRR8749029 | MeJA induced 9h | 15.888 |
| SRR8749030 | Uninduced | 25.529 |
| SRR8749031 | Uninduced | 17.662 |
| SRR8749032 | Uninduced | 21.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.017 |
| SRR8400027 | Control - Root | 24.171 |