Gene detail

Gene detail information of Glyur000038s00004475.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11870.1	0	Seryl-tRNA synthetase
NR	XP_003602834.1	0	Seryl-tRNA synthetase [Medicago truncatula]
COG	YP_005063952.1	6.00E-146	seryl-tRNA synthetase [Sphaerochaeta pleomorpha str. Grapes]
Swissprot	tr\|Q39230\|SYS_ARATH	4.00E-77	Serine--tRNA ligase
trEMBL	tr\|G7J3Z0\|G7J3Z0_MEDTR	0	Seryl-tRNA synthetase/serine-tRNA ligase {ECO:0000313\|EMBL:AES73085.1}

Sequence

Transcript Sequence

>Glyur000038s00004475.1
AAAAAACATATTTTATGGAGTGAAATCCAATTCTCGGAAATCCGACATATCATTATCAGTAATCTTATGTTTGCATGAAGTGAGGGGAAACAAGAATTGAGTTTGAGGTTCTGTCAAAAAATAAAAAAAGAATTGAGTTTGAGGATAAATTCACTGGGAGGGAGCCTCTGCCACTGGTTCTGAACAGAGACACAGATGACGAGTTTACATGGTTGTCTGAACGGNACAACCTTCCAAAGTCTCAAACTCGATGCAACTCCCACTTGGTACTCTTCCCCACGTTTCGTTTTCCCTTCTCTCCACAAAACCAAAACTCCAACCCTCCATTCCCAGAAACCCCCATTGCCGCGCCCCATCAAAGCTCTCTCCACTTCTACNACCGTCCAAACATCCCCTTCCACAACTAAAGTCCCCGACGACCACGGTGGGAAACCTCAATGGAAAGCCACAATAGACTTCAAGTGGATAAAGGATAACAAAGAAGCTGTTGCTGCCAACATTAGGAACCGCAACTCTGATGCTGATTTGGACCTCGTGCTCCACCTTTATGACAAAATGTTCAATCTTCAGAAGGAAGTTGAGAGGGTTCGGGGAGAGAGAAATGCAGTGGCTAACAAGATGAAAGGAAAATTAGAACCATCTGAGCGCCAAAGACTAATTGAAGAAGGTGGTGCTCTTGGGAAGAATTTGAAGGAGGGGCTTATTGCTCTGGAAGAAGACCTGGTGAAGCTTAAAGATAAGCTTCAACAGGAGGCGCAGTGTATACCGAACATGACTCATCCAGATGTTCCAATAGGAGGGGAGGATTGTTCCACTATAAGGAAGATGGTTGGCAGCTCTCCCAAATTTAGCTTTCCTGTCAAGGATCATCTCCAACTAGGAAAGGAACTTGATCTTTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGGTCAAAGTTCTACTACCTGAAAAATGAAGCAGTTTTATTGGAGATGGCTCTTTTAAATTGGACACTGTCAGAAGTGATGAAGAGAGGCTTTACTCCACTAACAACGCCTGAAATTGTACGGTCNTCTGTTGTTGAAAAATGCGGGTTCCAACCCCGTGCCAAAAATACCCAGGTTTATTCTATCGATGACAGTGACCAATGCCTTATCGGCACTGCAGAGATTCCTGTTGGGGGCCTTCATATGGACTCTATACTTGCTGACTCATTGTTACCCTTAAAATATGTGGCATTCTCACATTGTTTTCGTACCGAGGCAGGTGCTGCTGGCACTGCAACAAGGGGTCTTTATCGAGTTCACCAGTTCAGCAAAGTCGAAATGTTTATTTTCTGCCGCCCAGAAGAGAGTGAATATTACCATGAAGAGCTTATCAAAATTGAAGAAGACATGTTTTCATCCCTAGGGTTACATTTTAAAACTTTGGATATGGCCTCGGAAGATTTAGGTGCGCCTGCTTACCGTAAATTTGATGTGGAGGCATGGATGCCTGGTTTAGAACGGTTTGGTGAGATCTCAAGTGCATCAAATTGCACAGACTATCAGAGCCGTCGTTTGGGAATCCGGTATCGTCCATCAGAAGCACTTCCCATGGGTCCAAAAAAATCTAAAGGCAATCTAGCTCCACCACAGTTTGTTCACACGTTAAATGCAACAGCATGTGCTGTACCGCGGATGATTATATGTTTACTTGAGAATTACCAACAAGAAGATGGATCTGTTCTTATCCCTGAGCCCTTGAGGCCCTTCATGGGTGGACTTAATGTTATCACAAGAAAATCGTGATATAATGGATCATACGTAACATTTGTTTCCATTTGAAGGATGCTATTGCGGCATTAGATTGTGGGTGATAGATGAGTTGGAGCAATTTCATTGGAATGAAAGTGGCAAAGAATAATATTTTGACGATATCAAGTCATCTTTTCTGTTTTTGTTTCCTTCTTGAAATCGAATGTTTTGTATAGCTTGTTTATATATAATATCCACAGATTTGATAAAGCAACGTGTATCTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	227315	231515	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01875	SARS, serS	EC:6.1.1.11	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006434 seryl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004828 serine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004475.1	PF02403.17	Seryl_tRNA_N	86	193	1.30E-17
Glyur000038s00004475.1	PF00587.20	tRNA-synt_2b	259	427	7.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.226
SRR1783600	control	3.248
SRR1783602	moderate drought stress	6.543
SRR1811619	moderate drought stress	6.521

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.170
DRR006520	Root Summer glycyrrhizin high producing strain	2.204
DRR006521	Root Winter glycyrrhizin high producing strain	3.373
DRR006522	Root Winter glycyrrhizin high producing strain	3.326
DRR006523	Root Summer glycyrrhizin low producing strain	2.177
DRR006524	Root Summer glycyrrhizin low producing strain	2.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.736
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.406
SRR2868004	Drought Stress (root)	4.968
SRR2967015	Control (root)	4.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.520
SRR9715740	Leaf	39.061
SRR9715741	Leaf	26.261
SRR9715739	Root	1.790
SRR9715742	Root	2.227
SRR9715743	Root	2.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.933
SRR8749028	MeJA induced 9h	6.493
SRR8749029	MeJA induced 9h	3.798
SRR8749030	Uninduced	4.670
SRR8749031	Uninduced	1.638
SRR8749032	Uninduced	1.784

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.767
SRR8400027	Control - Root	5.669