Gene detail information of Glyur000038s00004474.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22460.1 | 3.00E-151 | O-fucosyltransferase family protein |
| NR | XP_004501690.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-67 | Uncharacterized protein At1g04910 |
| trEMBL | tr|K7KU98|K7KU98_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 221140 | 227028 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004474.1 | PF10250.4 | O-FucT | 79 | 383 | 3.00E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.863 |
| SRR1783600 | control | 7.931 |
| SRR1783602 | moderate drought stress | 9.156 |
| SRR1811619 | moderate drought stress | 9.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.976 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.875 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.599 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.755 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.748 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.580 |
| SRR2868004 | Drought Stress (root) | 35.262 |
| SRR2967015 | Control (root) | 18.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.164 |
| SRR9715740 | Leaf | 5.124 |
| SRR9715741 | Leaf | 4.800 |
| SRR9715739 | Root | 1.049 |
| SRR9715742 | Root | 10.286 |
| SRR9715743 | Root | 10.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.865 |
| SRR8749028 | MeJA induced 9h | 18.621 |
| SRR8749029 | MeJA induced 9h | 17.118 |
| SRR8749030 | Uninduced | 31.001 |
| SRR8749031 | Uninduced | 41.922 |
| SRR8749032 | Uninduced | 25.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.192 |
| SRR8400027 | Control - Root | 10.018 |