Gene detail information of Glyur000038s00004472 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40080.1 | 1.00E-35 | Mitochondrial ribosomal protein L27 |
| NR | XP_007136277.1 | 1.31E-55 | hypothetical protein PHAVU_009G033000g [Phaseolus vulgaris] |
| trEMBL | tr|V7AVL9|V7AVL9_PHAVU | 5.00E-56 | Uncharacterized protein {ECO:0000313|EMBL:ESW08271.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 203219 | 206105 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004472.1 | PF09809.4 | MRP-L27 | 23 | 78 | 4.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.685 |
| SRR1783600 | control | 25.991 |
| SRR1783602 | moderate drought stress | 30.343 |
| SRR1811619 | moderate drought stress | 29.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.096 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.209 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.337 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.006 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.796 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.735 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.943 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.525 |
| SRR2868004 | Drought Stress (root) | 35.828 |
| SRR2967015 | Control (root) | 32.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.897 |
| SRR9715740 | Leaf | 25.696 |
| SRR9715741 | Leaf | 18.099 |
| SRR9715739 | Root | 19.702 |
| SRR9715742 | Root | 17.333 |
| SRR9715743 | Root | 14.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 84.943 |
| SRR8749028 | MeJA induced 9h | 54.802 |
| SRR8749029 | MeJA induced 9h | 64.535 |
| SRR8749030 | Uninduced | 15.018 |
| SRR8749031 | Uninduced | 4.464 |
| SRR8749032 | Uninduced | 11.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.371 |
| SRR8400027 | Control - Root | 43.800 |