Gene detail information of Glyur000038s00004471 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003523806.2 | 0 | PREDICTED: queuine tRNA-ribosyltransferase-like isoform X1 [Glycine max] |
| COG | YP_143572.1 | 2.00E-119 | queuine tRNA-ribosyltransferase [Thermus thermophilus HB8] |
| trEMBL | tr|G7KFH7|G7KFH7_MEDTR | 0 | Queuine tRNA-ribosyltransferase {ECO:0000256|RuleBase:RU003777} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 193745 | 200538 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004471.1 | PF01702.13 | TGT | 156 | 391 | 1.40E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.249 |
| SRR1783600 | control | 1.071 |
| SRR1783602 | moderate drought stress | 1.770 |
| SRR1811619 | moderate drought stress | 1.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.043 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.026 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.453 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.980 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.814 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.175 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.362 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.413 |
| SRR2868004 | Drought Stress (root) | 6.382 |
| SRR2967015 | Control (root) | 7.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.865 |
| SRR9715740 | Leaf | 2.665 |
| SRR9715741 | Leaf | 3.401 |
| SRR9715739 | Root | 1.265 |
| SRR9715742 | Root | 3.673 |
| SRR9715743 | Root | 2.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.895 |
| SRR8749028 | MeJA induced 9h | 14.694 |
| SRR8749029 | MeJA induced 9h | 15.804 |
| SRR8749030 | Uninduced | 13.484 |
| SRR8749031 | Uninduced | 13.342 |
| SRR8749032 | Uninduced | 14.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.956 |
| SRR8400027 | Control - Root | 4.636 |