Gene detail information of Glyur000038s00004467 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72230.1 | 9.00E-34 | Cupredoxin superfamily protein |
| NR | AFK39061.1 | 4.50E-83 | unknown [Lotus japonicus] |
| Swissprot | tr|Q41001|BCP_PEA | 2.00E-69 | Blue copper protein (Precursor) |
| trEMBL | tr|I3SFL9|I3SFL9_LOTJA | 2.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:AFK39061.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 168478 | 169778 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004467.1 | PF02298.12 | Cu_bind_like | 37 | 114 | 6.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.254 |
| SRR1783600 | control | 19.494 |
| SRR1783602 | moderate drought stress | 19.981 |
| SRR1811619 | moderate drought stress | 19.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 112.140 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 111.733 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.141 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.136 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.661 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.254 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.768 |
| SRR2868004 | Drought Stress (root) | 50.802 |
| SRR2967015 | Control (root) | 30.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.683 |
| SRR9715740 | Leaf | 36.858 |
| SRR9715741 | Leaf | 20.951 |
| SRR9715739 | Root | 26.951 |
| SRR9715742 | Root | 63.224 |
| SRR9715743 | Root | 57.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.809 |
| SRR8749028 | MeJA induced 9h | 5.604 |
| SRR8749029 | MeJA induced 9h | 0.932 |
| SRR8749030 | Uninduced | 6.246 |
| SRR8749031 | Uninduced | 1.581 |
| SRR8749032 | Uninduced | 2.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 63.187 |
| SRR8400027 | Control - Root | 98.726 |