Gene detail

Gene detail information of Glyur000038s00004466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09040.1	5.00E-58	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_003602847.1	1.29E-114	Multiple RNA-binding domain-containing protein [Medicago truncatula]
COG	YP_008869813.1	4.00E-08	RNP-1 like protein RNA-binding protein [candidate division WWE3 bacterium RAAC2_WWE3_1]
Swissprot	tr\|Q08935\|ROC1_NICSY	3.00E-17	29 kDa ribonucleoprotein A, chloroplastic (Precursor)
trEMBL	tr\|G7J4G2\|G7J4G2_MEDTR	5.00E-115	RNA recognition motif {ECO:0000313\|EMBL:AES73098.1}

Sequence

Transcript Sequence

>Glyur000038s00004466.1
AAGATAACGATGTCGTTTTACTACGGGACATACCCTTATCCATTTCGCTTGGCACTTCCCCAAAACCAAACCTCAAAAATTGAGAGCAGAGTAACCCAGATGCTCTGAAAGTGAATGCAAATGGCGCTACTACTACGTGTTCTGTGCTTAACCCCAACAACAACTCACTTACCCACAAAGCACCATTATCATGTGACCCCTTTCTCATCCTTTGAGTTTGAGAAGAAGGAACCTTATTCCAAAACCAACACCAATCTCTTGTTTNGTCAGCCACACCCTTCGTTTCACCCTCTACGCCTATCCCTGGCACATACCCCATCCCTTATCAGAACCAAAGAAGCTTCTAGTAACTTCACCCTCAGACTCGCCTCTACCTCACAAGAACAGAGTCTAAAAACAGAGGCAGCAACGGAAGAAGAAGAAGAGTATTCTCAGACCAGGTTGCTCGCTCAGAACGTGCCATGGACAAGTACCCCTGAAGATATTCGCTCTCTGTTCGAAAGACATGGAAAAGTCCTCGAAGTTGAGCTTTCTATGTATAATAAGACGAGAAACAGGGGTTTGGCGTTTGTGGAAATGGGTTCCCCAGAAGAAGCTCTTGCGGCTCTCAATAGTCTCGAATCGTATAAAACTCCACCTCNGGCACTGCAACGGAAGCCATTGACATTCAACTTGTTTGTCGCAAACTTGTCCTATGAAGCGAGGTCTAAAGATCTCAAGGAGTTTTTNGATTCGGGAACTGGTAGAGTTGTTTCTGCAGAGGTTATATTTCATGATAACCCTAGAAGGTCATCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGATGCAGCTCTTTCTGAGTTCCAAGNAAAGAGTTTTATGGGAAGGGCAATCAGGGTGGCACCTAGTAAGCGATTTGTTCAACCAGGAGAGAAGAGTGCAGGGTCTGAAGATACATCTTCTGAGTCGAGCGTGAATGAGGCAGAAGCTAACAAAGCAGATTGATATCATTATTTCCCCACTGCATATCAATGTTATTGATGTTGTATGCCCTTGCTTCAGACGTTTTGATTGTTTGCTCATTCTTTCTGATAATGCAGAGTCTTTGATTGGTTTTATTTATGTGTGTTTTACAGGTGATTGGCACCTTTGTAAACCAGAGTTTGAACAGAAAGGGAAATGAATAGGTGTGAGCTAGCACAGGCATTTCTGTGATTCAAGAAATGAATAGTCTTTGTATGAAAGAGAGAAACATATCTATACTAGTGATTTATTTCTTCTTCTTATAATCGAGTCTNGAGGGAGTAGCTTCCATGACCATAAAAATTCAAACTTTCAAAATGAAGACAATAAGGTGAANAACAAAAACTCAAGTATCTGAACTAACACGTTGATTGATGTTGCCATTGTCTTAACATGTGATCCTTTGTCCTAGTTCAGTTGAATATATGGCTGGAAAGTGGAAACCCTGTAACAGTGTGATTGCTCCTATGTCACTTTAACTAAAACCACAAATAGTAGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	163166	166736	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004466.1	PF14259.1	RRM_6	113	168	9.90E-14
Glyur000038s00004466.1	PF00076.17	RRM_1	187	258	2.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.908
SRR1783600	control	1.889
SRR1783602	moderate drought stress	5.224
SRR1811619	moderate drought stress	5.206

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.820
DRR006520	Root Summer glycyrrhizin high producing strain	7.653
DRR006521	Root Winter glycyrrhizin high producing strain	8.759
DRR006522	Root Winter glycyrrhizin high producing strain	8.580
DRR006523	Root Summer glycyrrhizin low producing strain	9.334
DRR006524	Root Summer glycyrrhizin low producing strain	9.117
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.298
SRR2868004	Drought Stress (root)	9.017
SRR2967015	Control (root)	9.994

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.022
SRR9715740	Leaf	94.231
SRR9715741	Leaf	44.760
SRR9715739	Root	1.126
SRR9715742	Root	2.661
SRR9715743	Root	1.227

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.174
SRR8749028	MeJA induced 9h	9.148
SRR8749029	MeJA induced 9h	3.139
SRR8749030	Uninduced	7.218
SRR8749031	Uninduced	0.732
SRR8749032	Uninduced	1.839

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.265
SRR8400027	Control - Root	5.639